text: # Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class Shortstack(Package):
      """ShortStack is a tool developed to process and analyze smallRNA-seq data
         with respect to a reference genome, and output a comprehensive and
         informative annotation of all discovered small RNA genes."""
  
      homepage = "http://sites.psu.edu/axtell/software/shortstack/"
      url      = "https://github.com/MikeAxtell/ShortStack/archive/v3.8.3.tar.gz"
  
      version('3.8.3', sha256='7c76f51ed949ca95ec5df7cb54803ae2350658fd64c75909351d5a856abb0dbe')
  
      depends_on('perl', type=('build', 'run'))
      depends_on('samtools')
      depends_on('viennarna')
      depends_on('bowtie')
  
      def install(self, spec, prefix):
          mkdirp(prefix.bin)
          install('ShortStack', prefix.bin)
  