text: genome_id	genome_name	patric_id	refseq_locus_tag	gene	product	role_name	superclass	class	subclass	subsystem_name
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.4	Acin_0004	recF	DNA recombination and repair protein RecF	DNA recombination and repair protein RecF	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial RecFOR pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.7	Acin_0007		DNA gyrase subunit B (EC 5.99.1.3)	DNA gyrase subunit B (EC 5.99.1.3)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in DNA processing
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.7	Acin_0007		DNA gyrase subunit B (EC 5.99.1.3)	DNA gyrase subunit B (EC 5.99.1.3)	DNA Processing	DNA Processing	DNA replication	DNA topoisomerases, Type II, ATP-dependent
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.10	Acin_0010		DNA gyrase subunit A (EC 5.99.1.3)	DNA gyrase subunit A (EC 5.99.1.3)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in DNA processing
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.10	Acin_0010		DNA gyrase subunit A (EC 5.99.1.3)	DNA gyrase subunit A (EC 5.99.1.3)	DNA Processing	DNA Processing	DNA replication	DNA topoisomerases, Type II, ATP-dependent
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.16	Acin_0019	dapF	Diaminopimelate epimerase (EC 5.1.1.7)	Diaminopimelate epimerase (EC 5.1.1.7)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	"Diaminopimelate Synthesis "
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.16	Acin_0019	dapF	Diaminopimelate epimerase (EC 5.1.1.7)	Diaminopimelate epimerase (EC 5.1.1.7)	Metabolism	Amino Acids and Derivatives		Amino acid racemase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.16	Acin_0019	dapF	Diaminopimelate epimerase (EC 5.1.1.7)	Diaminopimelate epimerase (EC 5.1.1.7)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Lysine DAP biosynthetic pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.17	Acin_0020		L,L-diaminopimelate aminotransferase (EC 2.6.1.83)	L,L-diaminopimelate aminotransferase (EC 2.6.1.83)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	"Diaminopimelate Synthesis "
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.17	Acin_0020		L,L-diaminopimelate aminotransferase (EC 2.6.1.83)	L,L-diaminopimelate aminotransferase (EC 2.6.1.83)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Lysine DAP biosynthetic pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.21	Acin_0024	aroA	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.22	Acin_0025		Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)	Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.22	Acin_0025		Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)	Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Phenylalanine and Tyrosine synthesis 1
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.23	Acin_0026	aroB	3-dehydroquinate synthase (EC 4.2.3.4)	3-dehydroquinate synthase (EC 4.2.3.4)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.24	Acin_0027	aroA	3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)	3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.25	Acin_0028	aroC	Chorismate synthase (EC 4.2.3.5)	Chorismate synthase (EC 4.2.3.5)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.26	Acin_0029	pheA	Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51)	Prephenate dehydratase (EC 4.2.1.51)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.26	Acin_0029	pheA	Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51)	Prephenate dehydratase (EC 4.2.1.51)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Phenylalanine and Tyrosine synthesis 1
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.27	Acin_0030	aroE	Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.31	Acin_0035	aroE	Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)	Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.42	Acin_0046	adhE	Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)	Acetaldehyde dehydrogenase (EC 1.2.1.10)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Lactate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.42	Acin_0046	adhE	Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)	Acetaldehyde dehydrogenase (EC 1.2.1.10)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.42	Acin_0046	adhE	Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)	Acetaldehyde dehydrogenase (EC 1.2.1.10)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.42	Acin_0046	adhE	Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)	Alcohol dehydrogenase (EC 1.1.1.1)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.45	Acin_0049	aroD	3-dehydroquinate dehydratase I (EC 4.2.1.10)	3-dehydroquinate dehydratase I (EC 4.2.1.10)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.46	Acin_0050	aroK	Shikimate kinase I (EC 2.7.1.71)	Shikimate kinase I (EC 2.7.1.71)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.53	Acin_0057		Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Pyruvate-flavodoxin oxidoreductase	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate:ferredoxin oxidoreductase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.57	Acin_0062		Sodium-dependent phosphate transporter	Sodium-dependent phosphate transporter	Membrane Transport	Membrane Transport	Uni- Sym- and Antiporters	NhaA, NhaD and Sodium-dependent phosphate transporters
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.59	Acin_0064	nrdA	Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)	Metabolism	Nucleosides and Nucleotides		Ribonucleotide reduction
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.77	Acin_0082	clpP	ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)	Energy	Respiration	Biogenesis of respiratory chain components	Biogenesis of c-type cytochromes
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.78	Acin_0083	clpX	ATP-dependent Clp protease ATP-binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit ClpX	Energy	Respiration	Biogenesis of respiratory chain components	Biogenesis of c-type cytochromes
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.80	Acin_0085		GTP-binding protein EngB	GTP-binding protein EngB	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.81	Acin_0086		Uncharacterized Nudix hydrolase NudL	Uncharacterized Nudix hydrolase NudL	Metabolism	Metabolite damage and its repair or mitigation		Nudix proteins (nucleoside triphosphate hydrolases)
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.90	Acin_0095	uvrB	Excinuclease ABC subunit B	Excinuclease ABC subunit B	DNA Processing	DNA Processing	DNA repair	DNA repair, UvrABC system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.91	Acin_0096	uvrA	Excinuclease ABC subunit A	Excinuclease ABC subunit A	DNA Processing	DNA Processing	DNA repair	DNA repair, UvrABC system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.92	Acin_0097	uvrC	Excinuclease ABC subunit C	Excinuclease ABC subunit C	DNA Processing	DNA Processing	DNA repair	DNA repair, UvrABC system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.101	Acin_0108	ilvH	Acetolactate synthase small subunit (EC 2.2.1.6)	Acetolactate synthase small subunit (EC 2.2.1.6)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Acetolactate synthase subunits
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.101	Acin_0108	ilvH	Acetolactate synthase small subunit (EC 2.2.1.6)	Acetolactate synthase small subunit (EC 2.2.1.6)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.102	Acin_0109	ilvB	Acetolactate synthase large subunit (EC 2.2.1.6)	Acetolactate synthase large subunit (EC 2.2.1.6)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Acetolactate synthase subunits
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.102	Acin_0109	ilvB	Acetolactate synthase large subunit (EC 2.2.1.6)	Acetolactate synthase large subunit (EC 2.2.1.6)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.103	Acin_0110	ilvC	Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86)	Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.107	Acin_0114	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)	Dihydroxy-acid dehydratase (EC 4.2.1.9)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.141	Acin_0149		Substrate-specific component BioY of biotin ECF transporter	Substrate-specific component BioY of biotin ECF transporter	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.141	Acin_0149		Substrate-specific component BioY of biotin ECF transporter	Substrate-specific component BioY of biotin ECF transporter	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.141	Acin_0149		Substrate-specific component BioY of biotin ECF transporter	Substrate-specific component BioY of biotin ECF transporter	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.142	Acin_0150	bioD	Dethiobiotin synthetase (EC 6.3.3.3)	Dethiobiotin synthase BioD (EC 6.3.3.3)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.142	Acin_0150	bioD	Dethiobiotin synthetase (EC 6.3.3.3)	Dethiobiotin synthase BioD (EC 6.3.3.3)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.142	Acin_0150	bioD	Dethiobiotin synthetase (EC 6.3.3.3)	Dethiobiotin synthase BioD (EC 6.3.3.3)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.143	Acin_0151	bioA	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.143	Acin_0151	bioA	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.143	Acin_0151	bioA	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.148	Acin_0156		tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13)	tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13)	RNA Processing	RNA Processing	RNA processing and modification	5-methylaminomethyl-2-thiouridine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.153	Acin_0159	rpsF	SSU ribosomal protein S6p	SSU ribosomal protein S6p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.154	Acin_0161		Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial RecFOR pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.155	Acin_0162	rpsR	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-dependent	SSU ribosomal protein S18p, zinc-dependent	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.155	Acin_0162	rpsR	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-dependent	SSU ribosomal protein S18p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.164	Acin_0171		Aconitase family protein YbhJ	Aconitase family protein YbhJ	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Anaerobic module of TCA
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.174	Acin_0181	ntpI	V-type ATP synthase subunit I (EC 3.6.3.14)	V-type ATP synthase subunit I (EC 3.6.3.14)	Energy	Respiration	ATP synthases	V-Type ATP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.175	Acin_0182	ntpK	V-type ATP synthase subunit K (EC 3.6.3.14)	V-type ATP synthase subunit K (EC 3.6.3.14)	Energy	Respiration	ATP synthases	V-Type ATP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.177	Acin_0184	tpC	V-type ATP synthase subunit C (EC 3.6.3.14)	V-type ATP synthase subunit C (EC 3.6.3.14)	Energy	Respiration	ATP synthases	V-Type ATP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.178	Acin_0185	ntpF	V-type ATP synthase subunit F (EC 3.6.3.14)	V-type ATP synthase subunit F (EC 3.6.3.14)	Energy	Respiration	ATP synthases	V-Type ATP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.179	Acin_0186	ntpA	V-type ATP synthase subunit A (EC 3.6.3.14)	V-type ATP synthase subunit A (EC 3.6.3.14)	Energy	Respiration	ATP synthases	V-Type ATP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.180	Acin_0187	ntpB	V-type ATP synthase subunit B (EC 3.6.3.14)	V-type ATP synthase subunit B (EC 3.6.3.14)	Energy	Respiration	ATP synthases	V-Type ATP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.181	Acin_0188	ntpD	V-type ATP synthase subunit D (EC 3.6.3.14)	V-type ATP synthase subunit D (EC 3.6.3.14)	Energy	Respiration	ATP synthases	V-Type ATP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.207	Acin_0215	folD	Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) / Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	Metabolism	Carbohydrates	C-1 compound metabolism	One-carbon metabolism by tetrahydropterines
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.207	Acin_0215	folD	Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) / Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5)	Metabolism	Carbohydrates	C-1 compound metabolism	One-carbon metabolism by tetrahydropterines
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.209	Acin_0217	fadD	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.209	Acin_0217	fadD	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.218	Acin_0225	ilvE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.218	Acin_0225	ilvE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.218	Acin_0225	ilvE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate Alanine Serine Interconversions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.219	Acin_0226		Outer membrane protein A precursor	Outer membrane protein A precursor	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Osmotic stress	Osmoregulation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.219	Acin_0226		Outer membrane protein A precursor	Outer membrane protein A precursor	Cell Envelope	Cell Envelope, Capsule and Slime layer	Gram-Negative (Diderm) cell wall components	Outer membrane
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.220	Acin_0227	glcD	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Glycolate, glyoxylate interconversions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.222	Acin_0229	npdA	NAD-dependent protein deacetylase of SIR2 family	NAD-dependent protein deacetylase of SIR2 family	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.223	Acin_0230	serS	Seryl-tRNA synthetase (EC 6.1.1.11)	Seryl-tRNA synthetase (EC 6.1.1.11)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Ser
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.230	Acin_0237		Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1)	Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Polyamine Metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.233	Acin_0240		Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)	Copper-translocating P-type ATPase (EC 3.6.3.4)	Membrane Transport	Membrane Transport	Cation transporters	Copper Transport System
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.242	Acin_0249	serC	Phosphoserine aminotransferase (EC 2.6.1.52)	Phosphoserine aminotransferase (EC 2.6.1.52)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Pyridoxine	Pyridoxin (Vitamin B6) Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.253	Acin_0259		GTP-binding protein Obg	GTP-binding protein Obg	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.254	Acin_0260	proB	Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA	Glutamate 5-kinase (EC 2.7.2.11)	Metabolism	Metabolite damage and its repair or mitigation		Metabolite repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.254	Acin_0260	proB	Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA	Glutamate 5-kinase (EC 2.7.2.11)	Metabolism	Amino Acids and Derivatives	Proline and 4-hydroxyproline	Proline Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.254	Acin_0260	proB	Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA	RNA-binding C-terminal domain PUA	Metabolism	Metabolite damage and its repair or mitigation		Metabolite repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.255	Acin_0261	proA	Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	Metabolism	Amino Acids and Derivatives	Proline and 4-hydroxyproline	Proline Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.256	Acin_0262		RND efflux system, membrane fusion protein	RND efflux system, membrane fusion protein	Membrane Transport	Membrane Transport	Multidrug efflux systems	Tripartite multidrug efflux systems (of RND type) in Pseudomonas
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.269	Acin_0275		Cell division protein FtsH	Cell division-associated, ATP-dependent zinc metalloprotease FtsH	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Folate and pterines	Folate biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.272	Acin_0278		Stresses-induced protein Ves (HutD)	Stresses-induced protein Ves (HutD)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.273	Acin_0279		Glutamate formiminotransferase (EC 2.1.2.5) @ Glutamate formyltransferase	Glutamate formiminotransferase (EC 2.1.2.5)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.274	Acin_0280	fhs	Formate--tetrahydrofolate ligase (EC 6.3.4.3)	Formate--tetrahydrofolate ligase (EC 6.3.4.3)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.274	Acin_0280	fhs	Formate--tetrahydrofolate ligase (EC 6.3.4.3)	Formate--tetrahydrofolate ligase (EC 6.3.4.3)	Metabolism	Carbohydrates	C-1 compound metabolism	One-carbon metabolism by tetrahydropterines
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.275	Acin_0281		Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.275	Acin_0281		Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4)	Metabolism	Carbohydrates	C-1 compound metabolism	One-carbon metabolism by tetrahydropterines
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.279	Acin_0285		Histidine ammonia-lyase (EC 4.3.1.3)	Histidine ammonia-lyase (EC 4.3.1.3)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.282	Acin_0288	hutH	Histidine ammonia-lyase (EC 4.3.1.3)	Histidine ammonia-lyase (EC 4.3.1.3)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.283	Acin_0289	hutU	Urocanate hydratase (EC 4.2.1.49)	Urocanate hydratase (EC 4.2.1.49)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.284	Acin_0290	hutI	Imidazolonepropionase (EC 3.5.2.7)	Imidazolonepropionase (EC 3.5.2.7)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.289	Acin_0295	pccB	Methylmalonyl-CoA decarboxylase, alpha chain (EC 4.1.1.41); Glutaconyl-CoA decarboxylase alpha subunit (EC 4.1.1.70)	Glutaconyl-CoA decarboxylase alpha subunit (EC 4.1.1.70)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.290	Acin_0296		Glutaconyl-CoA decarboxylase delta subunit (EC 4.1.1.70)	Glutaconyl-CoA decarboxylase delta subunit (EC 4.1.1.70)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.291	Acin_0297	mmdC	Biotin carboxyl carrier protein => Glutaconyl-CoA decarboxylase gamma subunit	Biotin carboxyl carrier protein => Glutaconyl-CoA decarboxylase gamma subunit	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.292	Acin_0298	oadB	Glutaconyl-CoA decarboxylase beta subunit (EC 4.1.1.70)	Glutaconyl-CoA decarboxylase beta subunit (EC 4.1.1.70)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.298	Acin_0304		Septum formation protein Maf	Septum formation protein Maf	Cellular Processes	Cell Cycle, Cell Division and Death		Bacterial cell division related cluster 2
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.307	Acin_0313	rne	Ribonuclease G	Ribonuclease G	RNA Processing	RNA Processing	RNA processing and modification	RNA processing and degradation, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.308	Acin_0314	pcnB	CCA tRNA nucleotidyltransferase (EC 2.7.7.72)	CCA tRNA nucleotidyltransferase (EC 2.7.7.72)	RNA Processing	RNA Processing	RNA processing and modification	tRNA nucleotidyltransferase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.309	Acin_0316	gctA	Glutaconate CoA-transferase subunit A (EC 2.8.3.12)	Glutaconate CoA-transferase subunit A (EC 2.8.3.12)	Metabolism	Secondary Metabolism	Metabolism of Aromatic Compounds	Glutaconate CoA-transferase or 3-oxoadipate CoA-transferase Subunits
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.309	Acin_0316	gctA	Glutaconate CoA-transferase subunit A (EC 2.8.3.12)	Glutaconate CoA-transferase subunit A (EC 2.8.3.12)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.310	Acin_0317	gctB	Glutaconate CoA-transferase subunit B (EC 2.8.3.12)	Glutaconate CoA-transferase subunit B (EC 2.8.3.12)	Metabolism	Secondary Metabolism	Metabolism of Aromatic Compounds	Glutaconate CoA-transferase or 3-oxoadipate CoA-transferase Subunits
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.310	Acin_0317	gctB	Glutaconate CoA-transferase subunit B (EC 2.8.3.12)	Glutaconate CoA-transferase subunit B (EC 2.8.3.12)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.311	Acin_0318		Glutaconyl-CoA decarboxylase alpha subunit (EC 4.1.1.70)	Glutaconyl-CoA decarboxylase alpha subunit (EC 4.1.1.70)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.312	Acin_0319		CoA-substrate-specific enzyme activase; 2-hydroxyglutaryl-CoA dehydratase activator, A-component	2-hydroxyglutaryl-CoA dehydratase activator, A-component	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.313	Acin_0320		2-hydroxyglutaryl-CoA dehydratase, D-component HgdA	2-hydroxyglutaryl-CoA dehydratase, D-component HgdA	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.314	Acin_0321		2-hydroxyglutaryl-CoA dehydratase, D-component HgdB	2-hydroxyglutaryl-CoA dehydratase, D-component HgdB	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.315	Acin_0322	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)	Metabolism	Nucleosides and Nucleotides		Ribonucleotide reduction
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.316	Acin_0323		Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)	Metabolism	Nucleosides and Nucleotides		Ribonucleotide reduction
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.341	Acin_0348		Peptide deformylase (EC 3.5.1.88)	Peptide deformylase (EC 3.5.1.88)	Protein Processing	Protein Synthesis	Translation	Translation termination factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.342	Acin_0349	fmt	Methionyl-tRNA formyltransferase (EC 2.1.2.9)	Methionyl-tRNA formyltransferase (EC 2.1.2.9)	Protein Processing	Protein Synthesis	Translation	Translation initiation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.348	Acin_0355		Ribosome small subunit biogenesis RbfA-release protein RsgA	Ribosome small subunit biogenesis RbfA-release protein RsgA	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.349	Acin_0356	rpe	Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pentose phosphate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.351	Acin_0358	ribD	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.351	Acin_0358	ribD	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.352	Acin_0359	ribE	Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.353	Acin_0360	ribA	3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)	3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.353	Acin_0360	ribA	3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)	GTP cyclohydrolase II (EC 3.5.4.25)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.354	Acin_0361	ribH	6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.356	Acin_0363	recA	RecA protein	RecA protein	DNA Processing	DNA Processing	DNA repair	DNA repair system including RecA, MutS and a hypothetical protein
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.356	Acin_0363	recA	RecA protein	RecA protein	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial RecFOR pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.359	Acin_0366		Ribonuclease Y	Ribonuclease Y	RNA Processing	RNA Processing	RNA processing and modification	RNA processing and degradation, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.374	Acin_0383	pnp	Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)		Clustering-based subsystems	Lysine Biosynthesis	Peptidase clustering with DAP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.374	Acin_0383	pnp	Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	RNA Processing	RNA Processing	RNA processing and modification	RNA processing and degradation, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.377	Acin_0386	rpmB	LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-dependent	LSU ribosomal protein L28p, zinc-dependent	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.377	Acin_0386	rpmB	LSU ribosomal protein L28p @ LSU ribosomal protein L28p, zinc-dependent	LSU ribosomal protein L28p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.380	Acin_0389		Elongation factor G-like protein TM_1651	Elongation factor G-like protein TM_1651	Protein Processing	Protein Synthesis	Translation	Translation elongation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.381	Acin_0390	tktA	Transketolase (EC 2.2.1.1)	Transketolase (EC 2.2.1.1)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pentose phosphate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.383	Acin_0392	thiM	Hydroxyethylthiazole kinase (EC 2.7.1.50)	Hydroxyethylthiazole kinase (EC 2.7.1.50)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Thiamin	Thiamin, thiazole, hydroxymethylpyrimidine salvage and uptake
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.386	Acin_0395		Signal recognition particle associated protein	Signal recognition particle associated protein	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.387	Acin_0396	ffh	Signal recognition particle protein Ffh	Signal recognition particle protein Ffh	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.387	Acin_0396	ffh	Signal recognition particle protein Ffh	Signal recognition particle protein Ffh	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.388	Acin_0397	rpsP	SSU ribosomal protein S16p	SSU ribosomal protein S16p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.393	Acin_0402	rplS	LSU ribosomal protein L19p	LSU ribosomal protein L19p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.393	Acin_0402	rplS	LSU ribosomal protein L19p	LSU ribosomal protein L19p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.394	Acin_0403	lepB	Signal peptidase I (EC 3.4.21.89)	Signal peptidase I (EC 3.4.21.89)		Clustering-based subsystems	Cell Division	Cell division related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.394	Acin_0403	lepB	Signal peptidase I (EC 3.4.21.89)	Signal peptidase I (EC 3.4.21.89)	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein processing and modification	Signal peptidase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.395	Acin_0404		LSU ribosomal maturation GTPase RbgA (B. subtilis YlqF)	LSU ribosomal maturation GTPase RbgA (B. subtilis YlqF)	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.396	Acin_0405	rnhB	Ribonuclease HII (EC 3.1.26.4)	Ribonuclease HII (EC 3.1.26.4)	RNA Processing	RNA Processing	RNA processing and modification	Ribonuclease H
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.403	Acin_0412		Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aspartate aminotransferase (EC 2.6.1.1)	Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Phenylalanine and Tyrosine synthesis 1
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.409	Acin_0417		DEAD-box ATP-dependent RNA helicase DeaD (= CshA) (EC 3.6.4.13)	DEAD-box ATP-dependent RNA helicase DeaD (= CshA) (EC 3.6.4.13)	RNA Processing	RNA Processing	RNA processing and modification	ATP-dependent RNA helicases, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.410	Acin_0418	gltX	Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Glutamyl-tRNA synthetase (EC 6.1.1.17)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Gln
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.410	Acin_0418	gltX	Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Glutamyl-tRNA synthetase (EC 6.1.1.17)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Glu
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.410	Acin_0418	gltX	Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Gln
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.410	Acin_0418	gltX	Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Glu
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.412	Acin_0420	rplM	LSU ribosomal protein L13p (L13Ae)	LSU ribosomal protein L13p (L13Ae)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.412	Acin_0420	rplM	LSU ribosomal protein L13p (L13Ae)	LSU ribosomal protein L13p (L13Ae)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.413	Acin_0421	rpsI	SSU ribosomal protein S9p (S16e)	SSU ribosomal protein S9p (S16e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.420	Acin_0430		tRNA pseudouridine(38-40) synthase (EC 5.4.99.12)	tRNA pseudouridine(38-40) synthase (EC 5.4.99.12)	RNA Processing	RNA Processing	RNA processing and modification	RNA pseudouridine synthases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.429	Acin_0439		Substrate-specific component BioY of biotin ECF transporter	Substrate-specific component BioY of biotin ECF transporter	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.429	Acin_0439		Substrate-specific component BioY of biotin ECF transporter	Substrate-specific component BioY of biotin ECF transporter	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.429	Acin_0439		Substrate-specific component BioY of biotin ECF transporter	Substrate-specific component BioY of biotin ECF transporter	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.430	Acin_0440		3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.430	Acin_0440		3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.431	Acin_0441		Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.431	Acin_0441		Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.448	Acin_0460		NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13)	NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13)	RNA Processing	RNA Processing	RNA processing and modification	Queuosine and archaeosine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.449	Acin_0461		7-cyano-7-deazaguanine synthase (EC 6.3.4.20)	7-cyano-7-deazaguanine synthase (EC 6.3.4.20)	RNA Processing	RNA Processing	RNA processing and modification	Queuosine and archaeosine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.450	Acin_0462	ptpS	6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50)	6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50)	RNA Processing	RNA Processing	RNA processing and modification	Queuosine and archaeosine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.451	Acin_0463		7-carboxy-7-deazaguanine synthase (EC 4.3.99.3)	7-carboxy-7-deazaguanine synthase (EC 4.3.99.3)	RNA Processing	RNA Processing	RNA processing and modification	Queuosine and archaeosine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.455	Acin_0467		L-alanine-DL-glutamate epimerase (EC 5.1.1.n1)	L-alanine-DL-glutamate epimerase (EC 5.1.1.n1)	Miscellaneous	Miscellaneous		Muconate lactonizing enzyme family
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.458	Acin_0470	glnA	Glutamine synthetase, clostridia type (EC 6.3.1.2)	Glutamine synthetase, clostridia type (EC 6.3.1.2)	Metabolism	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamine synthetases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.463	Acin_0475	pckA	Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.465	Acin_0477		tRNA threonylcarbamoyladenosine biosynthesis protein TsaE	tRNA threonylcarbamoyladenosine biosynthesis protein TsaE	RNA Processing	RNA Processing	RNA processing and modification	YrdC-YciO-Sua5 and associated protein families
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.466	Acin_0478		tRNA threonylcarbamoyladenosine biosynthesis protein TsaB	tRNA threonylcarbamoyladenosine biosynthesis protein TsaB	RNA Processing	RNA Processing	RNA processing and modification	YrdC-YciO-Sua5 and associated protein families
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.468	Acin_0480		N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234)	N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234)	Cellular Processes	Cell Cycle, Cell Division and Death		Macromolecular synthesis operon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.468	Acin_0480		N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234)	N(6)-L-threonylcarbamoyladenine synthase (EC 2.3.1.234)	RNA Processing	RNA Processing	RNA processing and modification	YrdC-YciO-Sua5 and associated protein families
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.471	Acin_0485	galU	UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Capsule and Slime layer	Streptococcal Hyaluronic Acid Capsule
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.481	Acin_0495		Methionine aminopeptidase (EC 3.4.11.18)	Methionine aminopeptidase (EC 3.4.11.18)	Protein Processing	Protein Synthesis	Translation	Translation termination factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.486	Acin_0500	uvrD	ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12)	ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12)	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial UvrD and related helicases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.487	Acin_0501	ligA	DNA ligase (NAD(+)) (EC 6.5.1.2)	DNA ligase (NAD(+)) (EC 6.5.1.2)	DNA Processing	DNA Processing	DNA repair	DNA Repair Base Excision
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.491	Acin_0505	ldh	L-lactate dehydrogenase (EC 1.1.1.27)	L-lactate dehydrogenase (EC 1.1.1.27)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Lactate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.491	Acin_0505	ldh	L-lactate dehydrogenase (EC 1.1.1.27)	L-lactate dehydrogenase (EC 1.1.1.27)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.499	Acin_0514		Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly	Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly	Protein Processing	Protein Synthesis	Translation	Translation elongation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.500	Acin_0515	cdd	Cytidine deaminase (EC 3.5.4.5)	Cytidine deaminase (EC 3.5.4.5)	Cellular Processes	Cell Cycle, Cell Division and Death	Programmed Cell Death and Toxin-antitoxin Systems	Murein hydrolase regulation and cell death
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.501	Acin_0516		GTP-binding protein Era	GTP-binding protein Era	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.502	Acin_0517		Magnesium and cobalt efflux protein CorC	Magnesium and cobalt efflux protein CorC	Membrane Transport	Membrane Transport	Cation transporters	Magnesium transport
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.503	Acin_0518	recO	DNA recombination and repair protein RecO	DNA recombination and repair protein RecO	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial RecFOR pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.511	Acin_0526	leuS	Leucyl-tRNA synthetase (EC 6.1.1.4)	Leucyl-tRNA synthetase (EC 6.1.1.4)	DNA Processing	DNA Processing	DNA uptake, competence	DNA internalization-related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.511	Acin_0526	leuS	Leucyl-tRNA synthetase (EC 6.1.1.4)	Leucyl-tRNA synthetase (EC 6.1.1.4)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Leu
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.513	Acin_0528		DNA internalization-related competence protein ComEC/Rec2	DNA internalization-related competence protein ComEC/Rec2	DNA Processing	DNA Processing	DNA uptake, competence	DNA internalization-related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.515	Acin_0530		Sodium/glutamate symporter	Sodium/glutamate symporter	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.518	Acin_0536	ispE	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.520	Acin_0538		Pur operon repressor PurR	Pur operon repressor PurR	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.521	Acin_0539	ilvA	Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)	Threonine dehydratase, catabolic (EC 4.3.1.19)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.523	Acin_0541	prsA	Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.523	Acin_0541	prsA	Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pentose phosphate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.524	Acin_0542		Peptidyl-tRNA hydrolase (EC 3.1.1.29)	Peptidyl-tRNA hydrolase (EC 3.1.1.29)	Cellular Processes	Prokaryotic cell type differentiation	Sporulation	Sporulation-associated proteins with broader functions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.524	Acin_0542		Peptidyl-tRNA hydrolase (EC 3.1.1.29)	Peptidyl-tRNA hydrolase (EC 3.1.1.29)	Protein Processing	Protein Synthesis	Translation	Translation termination factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.525	Acin_0543	sdaA	L-serine dehydratase, alpha subunit (EC 4.3.1.17)	L-serine dehydratase, alpha subunit (EC 4.3.1.17)	Metabolism	Amino Acids and Derivatives	Alanine, serine, and glycine	L-serine dehydratase subunits
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.525	Acin_0543	sdaA	L-serine dehydratase, alpha subunit (EC 4.3.1.17)	L-serine dehydratase, alpha subunit (EC 4.3.1.17)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate Alanine Serine Interconversions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.526	Acin_0544	sdaA	L-serine dehydratase, beta subunit (EC 4.3.1.17)	L-serine dehydratase, beta subunit (EC 4.3.1.17)	Metabolism	Amino Acids and Derivatives	Alanine, serine, and glycine	L-serine dehydratase subunits
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.526	Acin_0544	sdaA	L-serine dehydratase, beta subunit (EC 4.3.1.17)	L-serine dehydratase, beta subunit (EC 4.3.1.17)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate Alanine Serine Interconversions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.527	Acin_0545		Proton/glutamate symporter @ Sodium/glutamate symporter	Sodium/glutamate symporter	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.529	Acin_0547	rpmE	LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent	LSU ribosomal protein L31p, zinc-dependent	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.529	Acin_0547	rpmE	LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent	LSU ribosomal protein L31p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.529	Acin_0547	rpmE	LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent	LSU ribosomal protein L31p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.531	Acin_0549		Peptide chain release factor 1	Peptide chain release factor 1	Energy	Respiration	Biogenesis of respiratory chain components	Biogenesis of c-type cytochromes
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.531	Acin_0549		Peptide chain release factor 1	Peptide chain release factor 1	Protein Processing	Protein Synthesis	Translation	Translation termination factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.532	Acin_0550		Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297)	Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297)	RNA Processing	RNA Processing	RNA processing and modification	YrdC-YciO-Sua5 and associated protein families
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.533	Acin_0551		Threonylcarbamoyl-AMP synthase (EC 2.7.7.87) / SUA5 domain with internal deletion	Threonylcarbamoyl-AMP synthase (EC 2.7.7.87)	RNA Processing	RNA Processing	RNA processing and modification	YrdC-YciO-Sua5 and associated protein families
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.534	Acin_0553	rpiB	Ribose 5-phosphate isomerase B (EC 5.3.1.6)	Ribose-5-phosphate isomerase B (EC 5.3.1.6)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pentose phosphate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.536	Acin_0555	upp	Uracil phosphoribosyltransferase (EC 2.4.2.9)	Uracil phosphoribosyltransferase (EC 2.4.2.9)	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.541	Acin_0560	ttuC	D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83)	D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.542	Acin_0561		Chorismate mutase I (EC 5.4.99.5)	Chorismate mutase I (EC 5.4.99.5)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.542	Acin_0561		Chorismate mutase I (EC 5.4.99.5)	Chorismate mutase I (EC 5.4.99.5)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Phenylalanine and Tyrosine synthesis 1
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.549	Acin_0568	valS	Valyl-tRNA synthetase (EC 6.1.1.9)	Valyl-tRNA synthetase (EC 6.1.1.9)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Val
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.562	Acin_0580	potD	Spermidine/putrescine import ABC transporter substrate-binding protein PotD (TC 3.A.1.11.1)	Spermidine/putrescine import ABC transporter substrate-binding protein PotD (TC 3.A.1.11.1)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Polyamine Metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.563	Acin_0581	potC	Spermidine/putrescine import ABC transporter permease protein PotC (TC 3.A.1.11.1)	Spermidine/putrescine import ABC transporter permease protein PotC (TC 3.A.1.11.1)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Polyamine Metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.565	Acin_0583	potA	Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1)	Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Polyamine Metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.568	Acin_0586		NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	NAD-specific glutamate dehydrogenase (EC 1.4.1.2)	Metabolism	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamate dehydrogenases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.568	Acin_0586		NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Metabolism	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Glutamate dehydrogenases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.568	Acin_0586		NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Metabolism	Amino Acids and Derivatives	Proline and 4-hydroxyproline	Proline Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.578	Acin_0596	acnA	Aconitate hydratase (EC 4.2.1.3)	Aconitate hydratase (EC 4.2.1.3)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Anaerobic module of TCA
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.592	Acin_0610	murI	Glutamate racemase (EC 5.1.1.3)	Glutamate racemase (EC 5.1.1.3)	Metabolism	Amino Acids and Derivatives		Amino acid racemase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.603	Acin_0621	korA	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-)	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.604	Acin_0622	korB	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-)	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.605	Acin_0623	korG	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-)	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.615	Acin_0633		Lipopolysaccharide export system protein LptC	Lipopolysaccharide export system protein LptC	Membrane Transport	Membrane Transport		Lipopolysaccharide transporter LptABC
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.615	Acin_0633		Lipopolysaccharide export system protein LptC	Lipopolysaccharide export system protein LptC	Membrane Transport	Membrane Transport		Lpt lipopolysaccharide transport system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.617	Acin_0635	lptB	Lipopolysaccharide ABC transporter, ATP-binding protein LptB	Lipopolysaccharide ABC transporter, ATP-binding protein LptB	Membrane Transport	Membrane Transport		Lipopolysaccharide transporter LptABC
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.617	Acin_0635	lptB	Lipopolysaccharide ABC transporter, ATP-binding protein LptB	Lipopolysaccharide ABC transporter, ATP-binding protein LptB	Membrane Transport	Membrane Transport		Lpt lipopolysaccharide transport system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.618	Acin_0636		Lipopolysaccharide export system permease protein LptF @ Lipopolysaccharide export system permease protein LptG	Lipopolysaccharide export system permease protein LptF	Membrane Transport	Membrane Transport		Lpt lipopolysaccharide transport system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.618	Acin_0636		Lipopolysaccharide export system permease protein LptF @ Lipopolysaccharide export system permease protein LptG	Lipopolysaccharide export system permease protein LptG	Membrane Transport	Membrane Transport		Lpt lipopolysaccharide transport system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.621	Acin_0639		D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Pyridoxine	Pyridoxin (Vitamin B6) Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.623	Acin_0641	recJ	Single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	DNA Processing	DNA Processing	DNA repair	DNA Repair Base Excision
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.623	Acin_0641	recJ	Single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial RecFOR pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.624	Acin_0642	relA	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II	GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II	Regulation And Cell Signaling	Regulation and Cell signaling		Stringent Response, (p)ppGpp metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.624	Acin_0642	relA	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)	Regulation And Cell Signaling	Regulation and Cell signaling		Stringent Response, (p)ppGpp metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.625	Acin_0643		D-aminoacyl-tRNA deacylase (EC 3.1.1.96)	D-aminoacyl-tRNA deacylase (EC 3.1.1.96)	Metabolism	Metabolite damage and its repair or mitigation		D-tyrosyl-tRNA(Tyr) deacylase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.625	Acin_0643		D-aminoacyl-tRNA deacylase (EC 3.1.1.96)	D-aminoacyl-tRNA deacylase (EC 3.1.1.96)	Regulation And Cell Signaling	Regulation and Cell signaling		Stringent Response, (p)ppGpp metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.625	Acin_0643		D-aminoacyl-tRNA deacylase (EC 3.1.1.96)	D-aminoacyl-tRNA deacylase (EC 3.1.1.96)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Tyr
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.628	Acin_0646	hisS	Histidyl-tRNA synthetase (EC 6.1.1.21)	Histidyl-tRNA synthetase (EC 6.1.1.21)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, His
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.629	Acin_0647	aspS	Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	Aspartyl-tRNA synthetase (EC 6.1.1.12)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Asn
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.629	Acin_0647	aspS	Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	Aspartyl-tRNA synthetase (EC 6.1.1.12)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Asp
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.629	Acin_0647	aspS	Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Asn
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.629	Acin_0647	aspS	Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Asp
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.631	Acin_0649	lspA	Lipoprotein signal peptidase (EC 3.4.23.36)	Lipoprotein signal peptidase (EC 3.4.23.36)	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein processing and modification	Signal peptidase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.632	Acin_0650		Ribosomal large subunit pseudouridine synthase D (EC 5.4.99.23)	Ribosomal large subunit pseudouridine synthase D (EC 5.4.99.23)	RNA Processing	RNA Processing	RNA processing and modification	RNA pseudouridine synthases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.633	Acin_0651	pyrR	Pyrimidine operon regulatory protein PyrR	Pyrimidine operon regulatory protein PyrR	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.634	Acin_0652		Chromosome partition protein smc	Chromosome partition protein smc	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.635	Acin_0653	ftsY	Signal recognition particle receptor FtsY	Signal recognition particle receptor FtsY		Clustering-based subsystems	Cell Division	Cell division related cluster including coaD
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.635	Acin_0653	ftsY	Signal recognition particle receptor FtsY	Signal recognition particle receptor FtsY	Cellular Processes	Cell Cycle, Cell Division and Death		FtsEX cell-division-associated signaling system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.635	Acin_0653	ftsY	Signal recognition particle receptor FtsY	Signal recognition particle receptor FtsY	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.635	Acin_0653	ftsY	Signal recognition particle receptor FtsY	Signal recognition particle receptor FtsY	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.665	Acin_0685	uvrA	Excinuclease ABC subunit A paralog of unknown function	Excinuclease ABC subunit A paralog of unknown function	DNA Processing	DNA Processing	DNA repair	DNA repair, UvrABC system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.671	Acin_0691		Tetracycline resistance, ribosomal protection type => Tet(32)	Tetracycline resistance, ribosomal protection type => Tet(32)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Tetracycline resistance, all mechanisms
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.671	Acin_0691		Tetracycline resistance, ribosomal protection type => Tet(32)	Tetracycline resistance, ribosomal protection type => Tet(32)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Tetracycline resistance, ribosomal protection type
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.685	Acin_0705	purC	Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.688	Acin_0708	nth	Endonuclease III (EC 4.2.99.18)	Endonuclease III (EC 4.2.99.18)	DNA Processing	DNA Processing	DNA repair	DNA Repair Base Excision
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.703	Acin_0724		Aldehyde dehydrogenase B (EC 1.2.1.22)	Aldehyde dehydrogenase B (EC 1.2.1.22)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Methylglyoxal Metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.714	Acin_0738		Proton/glutamate symporter @ Sodium/glutamate symporter	Sodium/glutamate symporter	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.723	Acin_0747		Pyridoxal kinase (EC 2.7.1.35)	Pyridoxal kinase (EC 2.7.1.35)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Pyridoxine	Pyridoxin (Vitamin B6) Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.729	Acin_0755		NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase	Glutamine amidotransferase chain of NAD synthetase	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.729	Acin_0755		NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase	Glutamine amidotransferase chain of NAD synthetase	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis global
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.729	Acin_0755		NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase	NAD synthetase (EC 6.3.1.5)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.729	Acin_0755		NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase	NAD synthetase (EC 6.3.1.5)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis global
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.730	Acin_0756	thrC	Threonine synthase (EC 4.2.3.1)	Threonine synthase (EC 4.2.3.1)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Aspartate to Threonine Module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.733	Acin_0759		Probable transcriptional regulatory protein YebC	Probable transcriptional regulatory protein YebC	DNA Processing	DNA Processing	DNA recombination	RuvABC plus a hypothetical
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.734	Acin_0760	ruvC	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	DNA Processing	DNA Processing	DNA recombination	RuvABC plus a hypothetical
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.735	Acin_0761	ruvA	Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12)	Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12)	DNA Processing	DNA Processing	DNA recombination	RuvABC plus a hypothetical
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.736	Acin_0762	ruvB	Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12)	Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12)	DNA Processing	DNA Processing	DNA recombination	RuvABC plus a hypothetical
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.737	Acin_0763		FIG053235: Diacylglucosamine hydrolase like	Epoxyqueuosine reductase (EC 1.17.99.6) QueH	RNA Processing	RNA Processing	RNA processing and modification	Queuosine and archaeosine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.739	Acin_0765		S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17)	S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17)	RNA Processing	RNA Processing	RNA processing and modification	Queuosine and archaeosine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.740	Acin_0766		Queuine tRNA-ribosyltransferase (EC 2.4.2.29)	Queuine tRNA-ribosyltransferase (EC 2.4.2.29)	RNA Processing	RNA Processing	RNA processing and modification	Queuosine and archaeosine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.742	Acin_0768		5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	Metabolism	Carbohydrates	C-1 compound metabolism	One-carbon metabolism by tetrahydropterines
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.747	Acin_0772		Replication-associated recombination protein RarA	Replication-associated recombination protein RarA	DNA Processing	DNA Processing	DNA recombination	Replication-associated recombination protein RarA
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.749	Acin_0774		NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	Metabolism	Metabolite damage and its repair or mitigation		Damaged nicotinamide nucleotide NAD(P)HX repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.749	Acin_0774		NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136)	NAD(P)H-hydrate epimerase (EC 5.1.99.6)	Metabolism	Metabolite damage and its repair or mitigation		Damaged nicotinamide nucleotide NAD(P)HX repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.754	Acin_0779	argS	Arginyl-tRNA synthetase (EC 6.1.1.19)	Arginyl-tRNA synthetase (EC 6.1.1.19)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Arg
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.759	Acin_0784	mazG	Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)	Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)	Cellular Processes	Cell Cycle, Cell Division and Death	Programmed Cell Death and Toxin-antitoxin Systems	Nucleoside triphosphate pyrophosphohydrolase MazG
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.763	Acin_0789		tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	tRNA(Ile)-lysidine synthetase (EC 6.3.4.19)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Folate and pterines	Folate biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.764	Acin_0790	hpt	Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Folate and pterines	Folate biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.765	Acin_0791		Cell division protein FtsH	Cell division-associated, ATP-dependent zinc metalloprotease FtsH	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Folate and pterines	Folate biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.766	Acin_0792	birA	Biotin operon repressor / Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Biotin operon repressor	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.766	Acin_0792	birA	Biotin operon repressor / Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Biotin operon repressor	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.766	Acin_0792	birA	Biotin operon repressor / Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.766	Acin_0792	birA	Biotin operon repressor / Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.766	Acin_0792	birA	Biotin operon repressor / Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Biotin--protein ligase (EC 6.3.4.9)(EC 6.3.4.10)(EC 6.3.4.11)(EC 6.3.4.15)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.771	Acin_0797		Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)	Copper-translocating P-type ATPase (EC 3.6.3.4)	Membrane Transport	Membrane Transport	Cation transporters	Copper Transport System
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.797	Acin_0825		Hyaluronan synthase (EC 2.4.1.212)	Hyaluronan synthase (EC 2.4.1.212)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Capsule and Slime layer	Hyaluronic Acid-containing Cell Walls
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.797	Acin_0825		Hyaluronan synthase (EC 2.4.1.212)	Hyaluronan synthase (EC 2.4.1.212)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Capsule and Slime layer	Streptococcal Hyaluronic Acid Capsule
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.803	Acin_0831		L-lactate dehydrogenase	L-lactate dehydrogenase (EC 1.1.1.27)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Lactate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.803	Acin_0831		L-lactate dehydrogenase	L-lactate dehydrogenase (EC 1.1.1.27)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.804	Acin_0832		KtrAB potassium uptake system, integral membrane component KtrB	KtrAB potassium uptake system, integral membrane component KtrB	Membrane Transport	Membrane Transport	Cation transporters	Trk and Ktr potassium uptake systems
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.805	Acin_0833		KtrAB potassium uptake system, peripheral membrane component KtrA	KtrAB potassium uptake system, peripheral membrane component KtrA	Membrane Transport	Membrane Transport	Cation transporters	Trk and Ktr potassium uptake systems
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.807	Acin_0835	ileS	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in protein synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.807	Acin_0835	ileS	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Ile
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.808	Acin_0836		Repressor CsoR of the copZA operon	Repressor CsoR of the copZA operon	Membrane Transport	Membrane Transport	Cation transporters	Copper Transport System
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.809	Acin_0837		Copper(I) chaperone CopZ	Copper(I) chaperone CopZ	Membrane Transport	Membrane Transport	Cation transporters	Copper Transport System
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.811	Acin_0839		Periplasmic chaperone of outer membrane proteins Skp @ Outer membrane protein H precursor	Periplasmic chaperone of outer membrane proteins Skp	Cell Envelope	Cell Envelope, Capsule and Slime layer	Gram-Negative (Diderm) cell wall components	Outer membrane
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.813	Acin_0841		LPS-assembly protein LptD @ Organic solvent tolerance protein precursor	LPS-assembly protein LptD	Membrane Transport	Membrane Transport		Lpt lipopolysaccharide transport system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.826	Acin_0854		UPF0001 protein YggS	Pyridoxal phosphate-containing protein YggS	Cellular Processes	Cell Cycle, Cell Division and Death		Cell division cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.828	Acin_0856	proC	Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	Metabolism	Amino Acids and Derivatives	Proline and 4-hydroxyproline	Proline Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.841	Acin_0870		D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Pyridoxine	Pyridoxin (Vitamin B6) Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.843	Acin_0872	pdxK	Pyridoxal kinase (EC 2.7.1.35)	Pyridoxal kinase (EC 2.7.1.35)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Pyridoxine	Pyridoxin (Vitamin B6) Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.845	Acin_0874	lysS	Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)	Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Lys
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.846	Acin_0875		Sodium/glutamate symporter	Sodium/glutamate symporter	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.847	Acin_0877		Proton/glutamate symporter @ Sodium/glutamate symporter	Sodium/glutamate symporter	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.857	Acin_0887	hisZ	ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.858	Acin_0888	hisG	ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs	ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.859	Acin_0889	hisD	Histidinol dehydrogenase (EC 1.1.1.23)	Histidinol dehydrogenase (EC 1.1.1.23)	Cellular Processes	Cell Cycle, Cell Division and Death		Bacterial cell division related cluster 2
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.859	Acin_0889	hisD	Histidinol dehydrogenase (EC 1.1.1.23)	Histidinol dehydrogenase (EC 1.1.1.23)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.860	Acin_0890	hisC	Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Histidinol-phosphate aminotransferase (EC 2.6.1.9)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.861	Acin_0891	hisB	Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.862	Acin_0892	hisB	Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.863	Acin_0893	hisH	Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	Imidazole glycerol phosphate synthase amidotransferase subunit HisH	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.864	Acin_0894	hisA	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.865	Acin_0895	hisF	Imidazole glycerol phosphate synthase cyclase subunit HisF	Imidazole glycerol phosphate synthase cyclase subunit	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.866	Acin_0896	hisIE	Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.866	Acin_0896	hisIE	Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.867	Acin_0897	glmM	Phosphoglucosamine mutase (EC 5.4.2.10)	Phosphoglucosamine mutase (EC 5.4.2.10)	Cellular Processes	Cell Cycle, Cell Division and Death		Bacterial checkpoint-control-related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.870	Acin_0900	thrS	Threonyl-tRNA synthetase (EC 6.1.1.3)	Threonyl-tRNA synthetase (EC 6.1.1.3)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Thr
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.871	Acin_0901		Translation initiation factor 3	Translation initiation factor 3	Protein Processing	Protein Synthesis	Translation	Translation initiation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.872	Acin_0902	rpmI	LSU ribosomal protein L35p	LSU ribosomal protein L35p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.872	Acin_0902	rpmI	LSU ribosomal protein L35p	LSU ribosomal protein L35p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.873	Acin_0903	rplT	LSU ribosomal protein L20p	LSU ribosomal protein L20p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.873	Acin_0903	rplT	LSU ribosomal protein L20p	LSU ribosomal protein L20p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.874	Acin_0904	pyc	Pyruvate carboxylase (EC 6.4.1.1)	Pyruvate carboxylase (EC 6.4.1.1)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.876	Acin_0906	yarS	Tyrosyl-tRNA synthetase (EC 6.1.1.1)	Tyrosyl-tRNA synthetase (EC 6.1.1.1)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Tyr
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.878	Acin_0908		Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)	Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)	Metabolism	Metabolite damage and its repair or mitigation		Nudix proteins (nucleoside triphosphate hydrolases)
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.882	Acin_0912	mutS2	Recombination inhibitory protein MutS2	Recombination inhibitory protein MutS2	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial MutHLS system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.883	Acin_0913		SSU ribosomal protein S20p	SSU ribosomal protein S20p	DNA Processing	DNA Processing	DNA uptake, competence	DNA internalization-related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.883	Acin_0913		SSU ribosomal protein S20p	SSU ribosomal protein S20p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.884	Acin_0914		Translation elongation factor LepA	Translation elongation factor LepA	DNA Processing	DNA Processing	DNA uptake, competence	DNA internalization-related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.884	Acin_0914		Translation elongation factor LepA	Translation elongation factor LepA	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.884	Acin_0914		Translation elongation factor LepA	Translation elongation factor LepA	Protein Processing	Protein Synthesis	Translation	Translation elongation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.884	Acin_0914		Translation elongation factor LepA	Translation elongation factor LepA	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.891	Acin_0922	hemN	Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.893	Acin_0924		Heat-inducible transcription repressor HrcA	Heat-inducible transcription repressor HrcA	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Chaperones GroEL GroES and Thermosome
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.893	Acin_0924		Heat-inducible transcription repressor HrcA	Heat-inducible transcription repressor HrcA	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.894	Acin_0925		Heat shock protein GrpE	Heat shock protein GrpE	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Chaperones GroEL GroES and Thermosome
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.894	Acin_0925		Heat shock protein GrpE	Heat shock protein GrpE	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.894	Acin_0925		Heat shock protein GrpE	Heat shock protein GrpE	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Protein chaperones
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.895	Acin_0926	dnaK	Chaperone protein DnaK	Chaperone protein DnaK	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Chaperones GroEL GroES and Thermosome
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.895	Acin_0926	dnaK	Chaperone protein DnaK	Chaperone protein DnaK	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.895	Acin_0926	dnaK	Chaperone protein DnaK	Chaperone protein DnaK	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Protein chaperones
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.896	Acin_0927		Chaperone protein DnaJ	Chaperone protein DnaJ	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Chaperones GroEL GroES and Thermosome
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.896	Acin_0927		Chaperone protein DnaJ	Chaperone protein DnaJ	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.896	Acin_0927		Chaperone protein DnaJ	Chaperone protein DnaJ	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Protein chaperones
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.897	Acin_0928		Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.902	Acin_0933		tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3)	tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3)	RNA Processing	RNA Processing	RNA processing and modification	Methylthiotransferases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.902	Acin_0933		tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3)	tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3)	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein processing and modification	Ribosomal protein S12p Asp methylthiotransferase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.903	Acin_0934	mutS	DNA mismatch repair protein MutS	DNA mismatch repair protein MutS	DNA Processing	DNA Processing	DNA repair	DNA repair system including RecA, MutS and a hypothetical protein
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.903	Acin_0934	mutS	DNA mismatch repair protein MutS	DNA mismatch repair protein MutS	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial MutHLS system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.904	Acin_0935	mutL	DNA mismatch repair protein MutL	DNA mismatch repair protein MutL	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial MutHLS system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.907	Acin_0938	hfq	RNA-binding protein Hfq	RNA-binding protein Hfq	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence		Hfl operon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.911	Acin_0942		Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16)	Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	"Diaminopimelate Synthesis "
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.911	Acin_0942		Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16)	Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Lysine DAP biosynthetic pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.924	Acin_0957	ispF	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.925	Acin_0958	gltX1	Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Glutamyl-tRNA synthetase (EC 6.1.1.17)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Gln
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.925	Acin_0958	gltX1	Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Glutamyl-tRNA synthetase (EC 6.1.1.17)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Glu
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.925	Acin_0958	gltX1	Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Gln
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.925	Acin_0958	gltX1	Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Glu
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.926	Acin_0959	cysS	Cysteinyl-tRNA synthetase (EC 6.1.1.16)	Cysteinyl-tRNA synthetase (EC 6.1.1.16)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Cys
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.948	Acin_0985	pheS	Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Phe
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.949	Acin_0986	pheT	Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Phe
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.951	Acin_0988	galU	UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Capsule and Slime layer	Streptococcal Hyaluronic Acid Capsule
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.952	Acin_0989		UDP-galactopyranose mutase (EC 5.4.99.9)	UDP-galactopyranose mutase (EC 5.4.99.9)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Cell wall of Mycobacteria	Biosynthesis of Arabinogalactan in Mycobacteria
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.965	Acin_1003	rfbA	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Capsule and Slime layer	dTDP-rhamnose synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.966	Acin_1004	rfbB	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Capsule and Slime layer	dTDP-rhamnose synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.967	Acin_1005	rfbD	dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Capsule and Slime layer	dTDP-rhamnose synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.969	Acin_1007	rfbC	dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Capsule and Slime layer	dTDP-rhamnose synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.970	Acin_1008	wbpP	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Capsule and Slime layer	dTDP-rhamnose synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.981	Acin_1021	pyrB	Aspartate carbamoyltransferase (EC 2.1.3.2)	Aspartate carbamoyltransferase (EC 2.1.3.2)	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.982	Acin_1022	pyrC	Dihydroorotase (EC 3.5.2.3)	Dihydroorotase (EC 3.5.2.3)	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.983	Acin_1023	carA	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.983	Acin_1023	carA	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Cellular Processes	Cell Cycle, Cell Division and Death		Macromolecular synthesis operon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.984	Acin_1024	carB	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.984	Acin_1024	carB	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Cellular Processes	Cell Cycle, Cell Division and Death		Macromolecular synthesis operon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.985	Acin_1025		Dihydroorotate dehydrogenase (NAD(+)), electron transfer subunit (EC 1.3.1.14)	Dihydroorotate dehydrogenase (NAD(+)), electron transfer subunit (EC 1.3.1.14)	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.987	Acin_1027	pyrF	Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.988	Acin_1028	pyrE	Orotate phosphoribosyltransferase (EC 2.4.2.10)	Orotate phosphoribosyltransferase (EC 2.4.2.10)	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.994	Acin_1034		16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)	16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.995	Acin_1035	metG	Methionyl-tRNA synthetase (EC 6.1.1.10)	Methionyl-tRNA synthetase (EC 6.1.1.10)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Met
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1002	Acin_1042		Heat shock protein 60 family co-chaperone GroES	Heat shock protein 10 kDa family chaperone GroES	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Chaperones GroEL GroES and Thermosome
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1003	Acin_1043		Heat shock protein 60 family chaperone GroEL	Heat shock protein 60 kDa family chaperone GroEL	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Chaperones GroEL GroES and Thermosome
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1009	Acin_1049		Dihydroorotase (EC 3.5.2.3)	Dihydroorotase (EC 3.5.2.3)	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1016	Acin_1056	pstS	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)	Metabolism	Phosphate Metabolism		High affinity phosphate transporter and control of PHO regulon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1017	Acin_1057	pstC	Phosphate transport system permease protein PstC (TC 3.A.1.7.1)	Phosphate transport system permease protein PstC (TC 3.A.1.7.1)	Metabolism	Phosphate Metabolism		High affinity phosphate transporter and control of PHO regulon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1018	Acin_1058	pstA	Phosphate transport system permease protein PstA (TC 3.A.1.7.1)	Phosphate transport system permease protein PstA (TC 3.A.1.7.1)	Metabolism	Phosphate Metabolism		High affinity phosphate transporter and control of PHO regulon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1019	Acin_1059	pstB	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	Metabolism	Phosphate Metabolism		High affinity phosphate transporter and control of PHO regulon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1025	Acin_1065	trpS	Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Trp
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1028	Acin_1069	purE	N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)	N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1028	Acin_1069	purE	N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)	N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)	Metabolism	Nucleosides and Nucleotides	Purines	Purine nucleotide synthesis regulator
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1029	Acin_1070	purF	Amidophosphoribosyltransferase (EC 2.4.2.14)	Amidophosphoribosyltransferase (EC 2.4.2.14)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1030	Acin_1071	purM	Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1030	Acin_1071	purM	Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	Metabolism	Nucleosides and Nucleotides	Purines	Purine nucleotide synthesis regulator
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1031	Acin_1072	purN	Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1032	Acin_1073	purH	IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	IMP cyclohydrolase (EC 3.5.4.10)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1032	Acin_1073	purH	IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1033	Acin_1074	purD	Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1034	Acin_1075	guaB	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain	CBS domain	Metabolism	Nucleosides and Nucleotides	Purines	IMP and Xanthine conversion to XMP and GMP module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1034	Acin_1075	guaB	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1034	Acin_1075	guaB	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	Metabolism	Nucleosides and Nucleotides	Purines	IMP and Xanthine conversion to XMP and GMP module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1046	Acin_1089		Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Pyruvate-flavodoxin oxidoreductase	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate:ferredoxin oxidoreductase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1048	Acin_1091	leuC	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1049	Acin_1092	ptb	Branched-chain phosphotransacylase (EC 2.3.1.- )	Branched-chain phosphotransacylase (EC 2.3.1.- )	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1051	Acin_1094	buk	Branched-chain acyl kinase (EC 2.7.2.-)	Branched-chain acyl kinase (EC 2.7.2.-)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1055	Acin_1098		Sodium/glutamate symporter	Sodium/glutamate symporter	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1063	Acin_1106		(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	(2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis: Interconversions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1064	Acin_1107	dxs	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1064	Acin_1107	dxs	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Pyridoxine	Pyridoxin (Vitamin B6) Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1066	Acin_1109		NAD kinase (EC 2.7.1.23)	NAD kinase (EC 2.7.1.23)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1066	Acin_1109		NAD kinase (EC 2.7.1.23)	NAD kinase (EC 2.7.1.23)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis global
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1069	Acin_1112		ADP-ribose pyrophosphatase (EC 3.6.1.13)	ADP-ribose pyrophosphatase (EC 3.6.1.13)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1069	Acin_1112		ADP-ribose pyrophosphatase (EC 3.6.1.13)	ADP-ribose pyrophosphatase (EC 3.6.1.13)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis global
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1069	Acin_1112		ADP-ribose pyrophosphatase (EC 3.6.1.13)	ADP-ribose pyrophosphatase (EC 3.6.1.13)	Metabolism	Metabolite damage and its repair or mitigation		Nudix proteins (nucleoside triphosphate hydrolases)
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1070	Acin_1113		Spore core dehydratation and coat assembly protein SpoVS	Spore core dehydratation and coat assembly protein SpoVS	Cellular Processes	Prokaryotic cell type differentiation	Sporulation	SpoVS protein family
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1076	Acin_1119		Tripartite tricarboxylate transporter TctA family	Tripartite tricarboxylate transporter TctA family	Membrane Transport	Membrane Transport		Tricarboxylate transport system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1078	Acin_1121		Tripartite tricarboxylate transporter TctC family	Tripartite tricarboxylate transporter TctC family	Membrane Transport	Membrane Transport		Tricarboxylate transport system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1083	Acin_1126	dut	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Metabolism	Metabolite damage and its repair or mitigation		Metabolite repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1083	Acin_1126	dut	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Metabolism	Metabolite damage and its repair or mitigation		Nudix proteins (nucleoside triphosphate hydrolases)
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1085	Acin_1128	dapB	4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	"Diaminopimelate Synthesis "
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1085	Acin_1128	dapB	4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)		Clustering-based subsystems	Cell Division	Cell division related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1085	Acin_1128	dapB	4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Lysine DAP biosynthetic pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1085	Acin_1128	dapB	4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)	4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)		Clustering-based subsystems	Lysine Biosynthesis	Peptidase clustering with DAP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1086	Acin_1129	asd	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	"Diaminopimelate Synthesis "
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1086	Acin_1129	asd	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Metabolism	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Aspartate to Homoserine module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1086	Acin_1129	asd	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Aspartate to Threonine Module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1086	Acin_1129	asd	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Lysine DAP biosynthetic pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1086	Acin_1129	asd	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)		Clustering-based subsystems	Lysine Biosynthesis	Peptidase clustering with DAP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1087	Acin_1130	lysC	Aspartokinase (EC 2.7.2.4)	Aspartokinase (EC 2.7.2.4)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	"Diaminopimelate Synthesis "
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1087	Acin_1130	lysC	Aspartokinase (EC 2.7.2.4)	Aspartokinase (EC 2.7.2.4)	Metabolism	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Aspartate to Homoserine module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1087	Acin_1130	lysC	Aspartokinase (EC 2.7.2.4)	Aspartokinase (EC 2.7.2.4)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Aspartate to Threonine Module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1087	Acin_1130	lysC	Aspartokinase (EC 2.7.2.4)	Aspartokinase (EC 2.7.2.4)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Lysine DAP biosynthetic pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1087	Acin_1130	lysC	Aspartokinase (EC 2.7.2.4)	Aspartokinase (EC 2.7.2.4)		Clustering-based subsystems	Lysine Biosynthesis	Peptidase clustering with DAP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1088	Acin_1131	dapA	4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	"Diaminopimelate Synthesis "
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1088	Acin_1131	dapA	4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Lysine DAP biosynthetic pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1088	Acin_1131	dapA	4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)	4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)		Clustering-based subsystems	Lysine Biosynthesis	Peptidase clustering with DAP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1089	Acin_1132		FIG00031715: Predicted metal-dependent phosphoesterases (PHP family)	FIG00031715: Predicted metal-dependent phosphoesterases (PHP family)	RNA Processing	RNA Processing	RNA processing and modification	YrdC-YciO-Sua5 and associated protein families
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1091	Acin_1134	rnhC	Ribonuclease HIII (EC 3.1.26.4)	Ribonuclease HIII (EC 3.1.26.4)	RNA Processing	RNA Processing	RNA processing and modification	Ribonuclease H
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1096	Acin_1139		DNA translocase FtsK	DNA translocase FtsK	DNA Processing	DNA Processing	DNA recombination	Replication-associated recombination protein RarA
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1098	Acin_1141		Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4)	Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4)	RNA Processing	RNA Processing	RNA processing and modification	Methylthiotransferases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1098	Acin_1141		Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4)	Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4)	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein processing and modification	Ribosomal protein S12p Asp methylthiotransferase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1099	Acin_1142		ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13) / Nicotinamide-nucleotide amidase (EC 3.5.1.42)	ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1099	Acin_1142		ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13) / Nicotinamide-nucleotide amidase (EC 3.5.1.42)	Nicotinamide-nucleotide amidase (EC 3.5.1.42)	DNA Processing	DNA Processing	DNA repair	DNA repair system including RecA, MutS and a hypothetical protein
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1100	Acin_1143	deaD	DEAD-box ATP-dependent RNA helicase DeaD (= CshA) (EC 3.6.4.13)	DEAD-box ATP-dependent RNA helicase DeaD (= CshA) (EC 3.6.4.13)	RNA Processing	RNA Processing	RNA processing and modification	ATP-dependent RNA helicases, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1101	Acin_1144		Ribosome LSU-associated GTP-binding protein HflX	Ribosome LSU-associated GTP-binding protein HflX	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence		Hfl operon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1101	Acin_1144		Ribosome LSU-associated GTP-binding protein HflX	Ribosome LSU-associated GTP-binding protein HflX	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1117	Acin_1160		Peptide chain release factor 3	Peptide chain release factor 3	Protein Processing	Protein Synthesis	Translation	Translation termination factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1118	Acin_1161	thrB	Homoserine kinase (EC 2.7.1.39)	Homoserine kinase (EC 2.7.1.39)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Aspartate to Threonine Module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1119	Acin_1162		Homoserine dehydrogenase (EC 1.1.1.3)	Homoserine dehydrogenase (EC 1.1.1.3)	Metabolism	Amino Acids and Derivatives	Glutamine, glutamate, aspartate, asparagine; ammonia assimilation	Aspartate to Homoserine module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1119	Acin_1162		Homoserine dehydrogenase (EC 1.1.1.3)	Homoserine dehydrogenase (EC 1.1.1.3)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Aspartate to Threonine Module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1123	Acin_1166		GTP-binding protein EngA	GTP-binding protein EngA	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1124	Acin_1167	idi	Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)	Isopentenyl-diphosphate delta-isomerase, FMN-dependent (EC 5.3.3.2)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Isoprenoid Biosynthesis: Interconversions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1125	Acin_1168	rpsA	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.7.4) / Ribosomal protein S1 RNA-binding domain	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.7.4)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1126	Acin_1169	plsC	Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	Cellular Processes	Cell Cycle, Cell Division and Death		FtsEX cell-division-associated signaling system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1129	Acin_1172		Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.22)	Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.22)	RNA Processing	RNA Processing	RNA processing and modification	RNA pseudouridine synthases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1129	Acin_1172		Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.22)	Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.22)	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1130	Acin_1173		Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.22)	Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.22)	RNA Processing	RNA Processing	RNA processing and modification	RNA pseudouridine synthases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1130	Acin_1173		Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.22)	Ribosomal large subunit pseudouridine synthase B (EC 5.4.99.22)	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1131	Acin_1174		Segregation and condensation protein B	Segregation and condensation protein B	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1132	Acin_1175		Segregation and condensation protein A	Segregation and condensation protein A	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1138	Acin_1181		Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	RNA Processing	RNA Processing	RNA processing and modification	YrdC-YciO-Sua5 and associated protein families
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1140	Acin_1184		Sugar fermentation stimulation protein SfsA	Sugar fermentation stimulation protein SfsA	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1143	Acin_1187	purL	Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)	Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1143	Acin_1187	purL	Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)	Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1147	Acin_1191		Translation elongation factor P	Translation elongation factor P	Protein Processing	Protein Synthesis	Translation	Translation elongation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1148	Acin_1192		Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)	Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein degradation	Protein degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1152	Acin_1196		Putative pre-16S rRNA nuclease Yqg	Putative pre-16S rRNA nuclease Yqg	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response	Cluster containing Glutathione synthetase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1155	Acin_1199	alaS	Alanyl-tRNA synthetase (EC 6.1.1.7)	Alanyl-tRNA synthetase (EC 6.1.1.7)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Ala
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1156	Acin_1200	yhdR	Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aspartate aminotransferase (EC 2.6.1.1)	Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Phenylalanine and Tyrosine synthesis 1
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1157	Acin_1201	acnA	Aconitase family protein YbhJ	Aconitase family protein YbhJ	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Anaerobic module of TCA
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1158	Acin_1202	icd	Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Anaerobic module of TCA
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1162	Acin_1206	ldhA	D-lactate dehydrogenase (EC 1.1.1.28)	D-lactate dehydrogenase (EC 1.1.1.28)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Lactate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1162	Acin_1206	ldhA	D-lactate dehydrogenase (EC 1.1.1.28)	D-lactate dehydrogenase (EC 1.1.1.28)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1164	Acin_1208		tmRNA-binding protein SmpB	tmRNA-binding protein SmpB	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1164	Acin_1208		tmRNA-binding protein SmpB	tmRNA-binding protein SmpB	Protein Processing	Protein Synthesis	Translation	Trans-translation by stalled ribosomes
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1164	Acin_1208		tmRNA-binding protein SmpB	tmRNA-binding protein SmpB	Protein Processing	Protein Synthesis	Translation	Translation termination factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1165	Acin_1209	rnr	3'-to-5' exoribonuclease RNase R	3'-to-5' exoribonuclease RNase R	RNA Processing	RNA Processing	RNA processing and modification	RNA processing and degradation, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1168	Acin_1212		Protein translocase membrane subunit SecG	Protein translocase membrane subunit SecG	Cellular Processes	Cell Cycle, Cell Division and Death	Programmed Cell Death and Toxin-antitoxin Systems	Murein hydrolase regulation and cell death
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1224	Acin_1267	panC	Pantoate--beta-alanine ligase (EC 6.3.2.1)	Pantoate--beta-alanine ligase (EC 6.3.2.1)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Coenzyme A	Coenzyme A
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1224	Acin_1267	panC	Pantoate--beta-alanine ligase (EC 6.3.2.1)	Pantoate--beta-alanine ligase (EC 6.3.2.1)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Folate and pterines	Folate biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1225	Acin_1268	panD	Aspartate 1-decarboxylase (EC 4.1.1.11)	Aspartate 1-decarboxylase (EC 4.1.1.11)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Folate and pterines	Folate biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1229	Acin_1273		Quinone oxidoreductase (EC 1.6.5.5)	Quinone oxidoreductase (EC 1.6.5.5)	Energy	Respiration		Quinone oxidoreductase family
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1242	Acin_1286		ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12)	ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12)	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial UvrD and related helicases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1365	Acin_1408	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Arginine biosynthesis via N-acetyl-L-citrulline
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1366	Acin_1409		Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)	Copper-translocating P-type ATPase (EC 3.6.3.4)	Membrane Transport	Membrane Transport	Cation transporters	Copper Transport System
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1372	Acin_1415	mmuM	Homocysteine S-methyltransferase (EC 2.1.1.10)	Homocysteine S-methyltransferase (EC 2.1.1.10)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	S-methylmethionine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1379	Acin_1422		Substrate-specific component RibU of riboflavin ECF transporter	Substrate-specific component RibU of riboflavin ECF transporter	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1385	Acin_1428		Methylphosphotriester-DNA--protein-cysteine S-methyltransferase (EC 2.1.1.n11) / DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	DNA Processing	DNA Processing	DNA repair	DNA Repair Base Excision
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1391	Acin_1434	nudC	NADH pyrophosphatase (EC 3.6.1.22), decaps 5'-NAD modified RNA	NADH pyrophosphatase (EC 3.6.1.22), decaps 5'-NAD modified RNA	Metabolism	Metabolite damage and its repair or mitigation		Nudix proteins (nucleoside triphosphate hydrolases)
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1392	Acin_1435		Aminopeptidase C (EC 3.4.22.40)	Aminopeptidase C (EC 3.4.22.40)	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein degradation	Protein degradation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1407	Acin_1449	guaA	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1407	Acin_1449	guaA	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	Metabolism	Nucleosides and Nucleotides	Purines	GMP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1407	Acin_1449	guaA	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	Metabolism	Nucleosides and Nucleotides	Purines	IMP and Xanthine conversion to XMP and GMP module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1407	Acin_1449	guaA	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1407	Acin_1449	guaA	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2)	Metabolism	Nucleosides and Nucleotides	Purines	GMP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1407	Acin_1449	guaA	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)	GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2)	Metabolism	Nucleosides and Nucleotides	Purines	IMP and Xanthine conversion to XMP and GMP module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1408	Acin_1450		Uracil permease @ Uracil:proton symporter UraA	Uracil permease	Metabolism	Nucleosides and Nucleotides	Pyrimidines	De Novo Pyrimidine Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1414	Acin_1455	folK	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Folate and pterines	Folate biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1415	Acin_1456	folP	Dihydropteroate synthase (EC 2.5.1.15)	Dihydropteroate synthase (EC 2.5.1.15)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in metabolic pathways
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1415	Acin_1456	folP	Dihydropteroate synthase (EC 2.5.1.15)	Dihydropteroate synthase (EC 2.5.1.15)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Folate and pterines	Folate biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1417	Acin_1458	ptpS	6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50) @ Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)	6-carboxy-5,6,7,8-tetrahydropterin synthase (EC 4.1.2.50)	RNA Processing	RNA Processing	RNA processing and modification	Queuosine and archaeosine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1418	Acin_1459		tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)	tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1432	Acin_1474		Lactoylglutathione lyase (EC 4.4.1.5)	Lactoylglutathione lyase (EC 4.4.1.5)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Arsenic resistance
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1432	Acin_1474		Lactoylglutathione lyase (EC 4.4.1.5)	Lactoylglutathione lyase (EC 4.4.1.5)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response	Glutathione: Non-redox reactions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1432	Acin_1474		Lactoylglutathione lyase (EC 4.4.1.5)	Lactoylglutathione lyase (EC 4.4.1.5)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Methylglyoxal Metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1441	Acin_1483	gapA	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Pyridoxine	Pyridoxin (Vitamin B6) Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1443	Acin_1485		Proton/glutamate symporter @ Sodium/glutamate symporter	Sodium/glutamate symporter	Energy	Energy and Precursor Metabolites Generation	Fermentation	Na-driven 2-hydroxyglutarate pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1460	Acin_1504	coaBC	Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Coenzyme A	Coenzyme A
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1460	Acin_1504	coaBC	Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Coenzyme A	Coenzyme A
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1461	Acin_1505		DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	RNA Processing	RNA Processing	Transcription	RNA polymerase, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1476	Acin_1520		Ribonucleotide reductase transcriptional regulator NrdR	Ribonucleotide reductase transcriptional regulator NrdR	Metabolism	Nucleosides and Nucleotides		Ribonucleotide reduction
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1481	Acin_1525	ddlA	D-alanine--D-alanine ligase (EC 6.3.2.4)	D-alanine--D-alanine ligase (EC 6.3.2.4)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in cell wall biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1482	Acin_1526	murC	UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)	UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)	Cellular Processes	Cell Cycle, Cell Division and Death		Cell division cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1483	Acin_1527	murG	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	Cellular Processes	Cell Cycle, Cell Division and Death		Cell division cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1484	Acin_1528	murD	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	Cellular Processes	Cell Cycle, Cell Division and Death		Cell division cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1485	Acin_1529	mraY	Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	Cellular Processes	Cell Cycle, Cell Division and Death		Cell division cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1486	Acin_1530	murF	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)	Cellular Processes	Cell Cycle, Cell Division and Death		Cell division cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1487	Acin_1531	murE	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	Cellular Processes	Cell Cycle, Cell Division and Death		Cell division cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1490	Acin_1534		16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199)	16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199)	Cellular Processes	Cell Cycle, Cell Division and Death		Cell division cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1495	Acin_1540	bioB	Biotin synthase (EC 2.8.1.6)	Biotin synthase (EC 2.8.1.6)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1495	Acin_1540	bioB	Biotin synthase (EC 2.8.1.6)	Biotin synthase (EC 2.8.1.6)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis & utilization
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1495	Acin_1540	bioB	Biotin synthase (EC 2.8.1.6)	Biotin synthase (EC 2.8.1.6)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1519	Acin_1565	edd	Dihydroxy-acid dehydratase (EC 4.2.1.9)	Dihydroxy-acid dehydratase (EC 4.2.1.9)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1520	Acin_1566	korG	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-)	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1521	Acin_1567	korB	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-)	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1522	Acin_1568	korA	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-)	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1523	Acin_1569	korD	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, delta subunit, ferredoxin-like 4Fe-4S binding protein (EC 1.2.7.-)	2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, delta subunit, ferredoxin-like 4Fe-4S binding protein (EC 1.2.7.-)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Branched-chain amino acids and alpha-keto acids utilization as energy sources
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1524	Acin_1570	serA	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Pyridoxine	Pyridoxin (Vitamin B6) Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1528	Acin_1574		Glutamine amidotransferase, class I	Glutamine amidotransferase, class I	Metabolism	Nucleosides and Nucleotides	Purines	GMP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1529	Acin_1576	pncB	Nicotinate phosphoribosyltransferase (EC 6.3.4.21)	Nicotinate phosphoribosyltransferase (EC 6.3.4.21)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1529	Acin_1576	pncB	Nicotinate phosphoribosyltransferase (EC 6.3.4.21)	Nicotinate phosphoribosyltransferase (EC 6.3.4.21)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis global
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1536	Acin_1583	rpsO	SSU ribosomal protein S15p (S13e)	SSU ribosomal protein S15p (S13e)		Clustering-based subsystems	Lysine Biosynthesis	Peptidase clustering with DAP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1536	Acin_1583	rpsO	SSU ribosomal protein S15p (S13e)	SSU ribosomal protein S15p (S13e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1537	Acin_1584	ribF	FMN adenylyltransferase (EC 2.7.7.2) / Riboflavin kinase (EC 2.7.1.26)	FMN adenylyltransferase (EC 2.7.7.2)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1537	Acin_1584	ribF	FMN adenylyltransferase (EC 2.7.7.2) / Riboflavin kinase (EC 2.7.1.26)	Riboflavin kinase (EC 2.7.1.26)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1538	Acin_1585		tRNA pseudouridine(55) synthase (EC 5.4.99.25)	tRNA pseudouridine(55) synthase (EC 5.4.99.25)	RNA Processing	RNA Processing	RNA processing and modification	RNA pseudouridine synthases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1538	Acin_1585		tRNA pseudouridine(55) synthase (EC 5.4.99.25)	tRNA pseudouridine(55) synthase (EC 5.4.99.25)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Riboflavin, FMN, FAD	Riboflavin, FMN and FAD metabolism with fusion events
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1539	Acin_1586		3'-to-5' oligoribonuclease A, Bacillus type	3'-to-5' oligoribonuclease A, Bacillus type	RNA Processing	RNA Processing	RNA processing and modification	RNA processing and degradation, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1540	Acin_1587		Ribosome-binding factor A	Ribosome-binding factor A	Protein Processing	Protein Synthesis	Translation	Translation initiation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1541	Acin_1588		Translation initiation factor 2	Translation initiation factor 2	Protein Processing	Protein Synthesis	Translation	Translation initiation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1541	Acin_1588		Translation initiation factor 2	Translation initiation factor 2	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1550	Acin_1597		GTP-binding protein TypA/BipA	GTP-binding protein TypA/BipA	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1556	Acin_1604		Mg(2+)-transport-ATPase-associated protein MgtC	Mg(2+)-transport-ATPase-associated protein MgtC	Membrane Transport	Membrane Transport	Cation transporters	Magnesium transport
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1557	Acin_1605	proS	Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type	Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Pro
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1558	Acin_1606	gcpE	(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3)	(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1560	Acin_1608	dxr	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in metabolic pathways
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1560	Acin_1608	dxr	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Isoprenoids	Nonmevalonate Branch of Isoprenoid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1564	Acin_1611		Ribosome recycling factor	Ribosome recycling factor	Protein Processing	Protein Synthesis	Translation	Translation termination factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1566	Acin_1613		Translation elongation factor Ts	Translation elongation factor Ts	Protein Processing	Protein Synthesis	Translation	Translation elongation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1567	Acin_1614	rpsB	SSU ribosomal protein S2p (SAe)	SSU ribosomal protein S2p (SAe)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1569	Acin_1616		Alanyl-tRNA synthetase family protein	Alanyl-tRNA synthetase family protein	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Ala
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1571	Acin_1618		Ribonuclease III (EC 3.1.26.3)	Ribonuclease III (EC 3.1.26.3)	RNA Processing	RNA Processing	RNA processing and modification	RNA processing and degradation, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1571	Acin_1618		Ribonuclease III (EC 3.1.26.3)	Ribonuclease III (EC 3.1.26.3)	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1572	Acin_1619	fabF	3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1573	Acin_1620		Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)	Putative FabK-like enoyl-[acyl-carrier-protein] reductase	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Enoyl-[ACP] reductases disambiguation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1573	Acin_1620		Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)	Putative FabK-like enoyl-[acyl-carrier-protein] reductase	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Resistance to Triclosan
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1574	Acin_1621		Acyl carrier protein	Acyl carrier protein	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Acyl carrier protein
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1574	Acin_1621		Acyl carrier protein	Acyl carrier protein	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1574	Acin_1621		Acyl carrier protein	Acyl carrier protein	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1575	Acin_1622	fabG	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), FadG	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1575	Acin_1622	fabG	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), FadG	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1576	Acin_1623	fabD	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1576	Acin_1623	fabD	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1577	Acin_1624	fabH	3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)	3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1577	Acin_1624	fabH	3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)	3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1580	Acin_1627	rpmF	LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-dependent	LSU ribosomal protein L32p, zinc-dependent	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1580	Acin_1627	rpmF	LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-dependent	LSU ribosomal protein L32p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1582	Acin_1629	ackA	Acetate kinase (EC 2.7.2.1)	Acetate kinase (EC 2.7.2.1)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Lactate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1582	Acin_1629	ackA	Acetate kinase (EC 2.7.2.1)	Acetate kinase (EC 2.7.2.1)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1582	Acin_1629	ackA	Acetate kinase (EC 2.7.2.1)	Acetate kinase (EC 2.7.2.1)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1587	Acin_1634	coaD	Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	Phosphopantetheine adenylyltransferase (EC 2.7.7.3)		Clustering-based subsystems	Cell Division	Cell division related cluster including coaD
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1588	Acin_1635		16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171)	16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171)		Clustering-based subsystems	Cell Division	Cell division related cluster including coaD
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1591	Acin_1637	trxB	Alkyl hydroperoxide reductase protein F	Alkyl hydroperoxide reductase protein F	Metabolism	Metabolite damage and its repair or mitigation		Metabolite repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1592	Acin_1638		Alkyl hydroperoxide reductase protein C (EC 1.11.1.15)	Alkyl hydroperoxide reductase protein C (EC 1.11.1.15)	Metabolism	Metabolite damage and its repair or mitigation		Metabolite repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1596	Acin_1644		Transamidase GatB domain protein	Transamidase GatB domain protein	Cellular Processes	Cell Cycle, Cell Division and Death		Macromolecular synthesis operon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1598	Acin_1646		tRNA t(6)A37-methylthiotransferase (EC 2.8.4.5)	tRNA t(6)A37-methylthiotransferase (EC 2.8.4.5)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1598	Acin_1646		tRNA t(6)A37-methylthiotransferase (EC 2.8.4.5)	tRNA t(6)A37-methylthiotransferase (EC 2.8.4.5)	RNA Processing	RNA Processing	RNA processing and modification	Methylthiotransferases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1598	Acin_1646		tRNA t(6)A37-methylthiotransferase (EC 2.8.4.5)	tRNA t(6)A37-methylthiotransferase (EC 2.8.4.5)	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein processing and modification	Ribosomal protein S12p Asp methylthiotransferase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1599	Acin_1647		16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193)	16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response	Cluster containing Glutathione synthetase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1599	Acin_1647		16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193)	16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1600	Acin_1648		Ribosomal protein L11 methyltransferase	Ribosomal protein L11 methyltransferase	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1602	Acin_1650		Trk potassium uptake system protein TrkH	Trk potassium uptake system protein TrkH	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Osmotic stress	Hyperosmotic potassium uptake
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1602	Acin_1650		Trk potassium uptake system protein TrkH	Trk potassium uptake system protein TrkH	Membrane Transport	Membrane Transport	Cation transporters	Trk and Ktr potassium uptake systems
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1603	Acin_1651		Trk potassium uptake system protein TrkA	Trk potassium uptake system protein TrkA	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Osmotic stress	Hyperosmotic potassium uptake
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1603	Acin_1651		Trk potassium uptake system protein TrkA	Trk potassium uptake system protein TrkA	Membrane Transport	Membrane Transport	Cation transporters	Trk and Ktr potassium uptake systems
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1608	Acin_1656	pyk	Pyruvate kinase (EC 2.7.1.40) / Phosphohistidine swiveling domain	Pyruvate kinase (EC 2.7.1.40)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1625	Acin_1674	lysA	Diaminopimelate decarboxylase (EC 4.1.1.20)	Diaminopimelate decarboxylase (EC 4.1.1.20)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	"Diaminopimelate Synthesis "
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1625	Acin_1674	lysA	Diaminopimelate decarboxylase (EC 4.1.1.20)	Diaminopimelate decarboxylase (EC 4.1.1.20)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Lysine DAP biosynthetic pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1632	Acin_1681		Exonuclease SbcD	Exonuclease SbcD	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial SbcCD exonuclease
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1633	Acin_1682		Exonuclease SbcC	Exonuclease SbcC	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial SbcCD exonuclease
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1640	Acin_1689		Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)	Copper-translocating P-type ATPase (EC 3.6.3.4)	Membrane Transport	Membrane Transport	Cation transporters	Copper Transport System
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1642	Acin_1690		Mg/Co/Ni transporter MgtE, CBS domain-containing	Mg/Co/Ni transporter MgtE, CBS domain-containing	Membrane Transport	Membrane Transport	Cation transporters	Magnesium transport
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1647	Acin_1697	aroF	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Chorismate Synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1649	Acin_1699	sfcA	NADP-dependent malic enzyme (EC 1.1.1.40)	NADP-dependent malic enzyme (EC 1.1.1.40)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1651	Acin_1701		Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66)	Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Heat shock dnaK gene cluster extended
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1651	Acin_1701		Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66)	Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66)	Metabolism	Metabolite damage and its repair or mitigation		Metabolite repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1659	Acin_1709		Membrane proteins related to metalloendopeptidases	Murein hydrolase activator EnvC	Cellular Processes	Cell Cycle, Cell Division and Death		FtsEX cell-division-associated signaling system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1660	Acin_1710	ftsX	Cell-division-associated, ABC-transporter-like signaling protein FtsX	Cell-division-associated, ABC-transporter-like signaling protein FtsX		Clustering-based subsystems	Cell Division	Cell division related cluster including coaD
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1660	Acin_1710	ftsX	Cell-division-associated, ABC-transporter-like signaling protein FtsX	Cell-division-associated, ABC-transporter-like signaling protein FtsX	Cellular Processes	Cell Cycle, Cell Division and Death		FtsEX cell-division-associated signaling system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1661	Acin_1711	ftsE	Cell-division-associated, ABC-transporter-like signaling protein FtsE	Cell-division-associated, ABC-transporter-like signaling protein FtsE		Clustering-based subsystems	Cell Division	Cell division related cluster including coaD
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1661	Acin_1711	ftsE	Cell-division-associated, ABC-transporter-like signaling protein FtsE	Cell-division-associated, ABC-transporter-like signaling protein FtsE	Cellular Processes	Cell Cycle, Cell Division and Death		FtsEX cell-division-associated signaling system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1662	Acin_1712		Polysaccharide pyruvyl transferase	Polysaccharide pyruvyl transferase CsaB	Cell Envelope	Cell Envelope, Capsule and Slime layer	S-layer	Wall polysaccharide pyruvylation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1663	Acin_1713		FIG01165608: hypothetical protein	Polysaccharide biosynthesis protein X	Cell Envelope	Cell Envelope, Capsule and Slime layer	S-layer	Wall polysaccharide pyruvylation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1664	Acin_1714		Peptide chain release factor 2 @ programmed frameshift-containing	Peptide chain release factor 2	Protein Processing	Protein Synthesis	Translation	Programmed frameshift
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1664	Acin_1714		Peptide chain release factor 2 @ programmed frameshift-containing	Peptide chain release factor 2	Protein Processing	Protein Synthesis	Translation	Translation termination factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1664	Acin_1714		Peptide chain release factor 2 @ programmed frameshift-containing	programmed frameshift-containing	Protein Processing	Protein Synthesis	Translation	Programmed frameshift
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1666	Acin_1718		Ribosome hibernation promoting factor Hpf	Ribosome hibernation promoting factor Hpf	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome activity modulation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1714	Acin_1766	fabZ	3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1715	Acin_1767	lpxC	N-acetylglucosamine deacetylase (EC 3.5.1.-) / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)	Metabolism	Fatty Acids, Lipids, and Isoprenoids	Fatty acids	Fatty Acid Biosynthesis FASII
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1721	Acin_1773		Periplasmic chaperone of outer membrane proteins Skp @ Outer membrane protein H precursor	Periplasmic chaperone of outer membrane proteins Skp	Cell Envelope	Cell Envelope, Capsule and Slime layer	Gram-Negative (Diderm) cell wall components	Outer membrane
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1724	Acin_1776	tolC	Type I secretion outer membrane protein, TolC family	Type I secretion outer membrane protein, TolC family	Membrane Transport	Membrane Transport	Multidrug efflux systems	Tripartite multidrug efflux systems (of RND type) in Pseudomonas
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1732	Acin_1784	murA	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in cell wall biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1732	Acin_1784	murA	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	Cellular Processes	Cell Cycle, Cell Division and Death		Bacterial cell division related cluster 2
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1755	Acin_1807	recR	Recombination protein RecR	Recombination protein RecR	DNA Processing	DNA Processing	DNA uptake, competence	DNA processing cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1755	Acin_1807	recR	Recombination protein RecR	Recombination protein RecR	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial RecFOR pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1756	Acin_1808		Nucleoid-associated protein YaaK	Nucleoid-associated protein YaaK	DNA Processing	DNA Processing	DNA uptake, competence	DNA processing cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1756	Acin_1808		Nucleoid-associated protein YaaK	Nucleoid-associated protein YaaK	DNA Processing	DNA Processing	DNA repair	DNA repair, bacterial RecFOR pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1757	Acin_1809	dnaX	DNA polymerase III subunits gamma and tau (EC 2.7.7.7)	DNA polymerase III subunits gamma and tau (EC 2.7.7.7)	DNA Processing	DNA Processing	DNA uptake, competence	DNA processing cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1761	Acin_1813	alr	Alanine racemase (EC 5.1.1.1)	Alanine racemase (EC 5.1.1.1)	Metabolism	Amino Acids and Derivatives		Amino acid racemase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1761	Acin_1813	alr	Alanine racemase (EC 5.1.1.1)	Alanine racemase (EC 5.1.1.1)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in cell wall biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1761	Acin_1813	alr	Alanine racemase (EC 5.1.1.1)	Alanine racemase (EC 5.1.1.1)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate Alanine Serine Interconversions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1796	Acin_1848	dut	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Metabolism	Metabolite damage and its repair or mitigation		Metabolite repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1796	Acin_1848	dut	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	Metabolism	Metabolite damage and its repair or mitigation		Nudix proteins (nucleoside triphosphate hydrolases)
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1951	Acin_2013	gph	Phosphoglycolate phosphatase (EC 3.1.3.18)	Phosphoglycolate phosphatase (EC 3.1.3.18)	DNA Processing	DNA Processing	DNA repair	2-phosphoglycolate salvage
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1951	Acin_2013	gph	Phosphoglycolate phosphatase (EC 3.1.3.18)	Phosphoglycolate phosphatase (EC 3.1.3.18)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Glycolate, glyoxylate interconversions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1962	Acin_2024		Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1963	Acin_2025	pflD	Pyruvate formate-lyase (EC 2.3.1.54)	Pyruvate formate-lyase (EC 2.3.1.54)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1970	Acin_2032		Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Pyruvate-flavodoxin oxidoreductase	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate:ferredoxin oxidoreductase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1979	Acin_2040	phoR	Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)	Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)	Metabolism	Phosphate Metabolism		High affinity phosphate transporter and control of PHO regulon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1980	Acin_2041	phoB	Phosphate regulon transcriptional regulatory protein PhoB (SphR)	Phosphate regulon transcriptional regulatory protein PhoB (SphR)	Metabolism	Phosphate Metabolism		High affinity phosphate transporter and control of PHO regulon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1981	Acin_2042	pta	Phosphate acetyltransferase (EC 2.3.1.8)	Phosphate acetyltransferase (EC 2.3.1.8)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Lactate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1981	Acin_2042	pta	Phosphate acetyltransferase (EC 2.3.1.8)	Phosphate acetyltransferase (EC 2.3.1.8)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1981	Acin_2042	pta	Phosphate acetyltransferase (EC 2.3.1.8)	Phosphate acetyltransferase (EC 2.3.1.8)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1982	Acin_2043		Nicotinamidase (EC 3.5.1.19)	Nicotinamidase (EC 3.5.1.19)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1982	Acin_2043		Nicotinamidase (EC 3.5.1.19)	Nicotinamidase (EC 3.5.1.19)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis global
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.1999	Acin_2063	nrdB	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)	Metabolism	Nucleosides and Nucleotides		Ribonucleotide reduction
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2000	Acin_2064	nrdA	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)	Metabolism	Nucleosides and Nucleotides		Ribonucleotide reduction
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2004	Acin_2068		Uncharacterized secreted protein associated with spyDAC	Uncharacterized secreted protein associated with spyDAC	Cellular Processes	Cell Cycle, Cell Division and Death		Bacterial checkpoint-control-related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2005	Acin_2069		Diadenylate cyclase spyDAC; Bacterial checkpoint controller DisA with nucleotide-binding domain	Bacterial checkpoint controller DisA with nucleotide-binding domain	Cellular Processes	Cell Cycle, Cell Division and Death		Bacterial checkpoint-control-related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2005	Acin_2069		Diadenylate cyclase spyDAC; Bacterial checkpoint controller DisA with nucleotide-binding domain	Diadenylate cyclase spyDAC	Cellular Processes	Cell Cycle, Cell Division and Death		Bacterial checkpoint-control-related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2007	Acin_2074	argH	Argininosuccinate lyase (EC 4.3.2.1)	Argininosuccinate lyase (EC 4.3.2.1)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Arginine biosynthesis via N-acetyl-L-citrulline
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2008	Acin_2075	argG	Argininosuccinate synthase (EC 6.3.4.5)	Argininosuccinate synthase (EC 6.3.4.5)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Arginine biosynthesis via N-acetyl-L-citrulline
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2009	Acin_2076	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)	Ornithine carbamoyltransferase (EC 2.1.3.3)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Arginine biosynthesis via N-acetyl-L-citrulline
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2010	Acin_2077	argD	Acetylornithine aminotransferase (EC 2.6.1.11)	Acetylornithine aminotransferase (EC 2.6.1.11)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Arginine biosynthesis via N-acetyl-L-citrulline
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2011	Acin_2078	argB	Acetylglutamate kinase (EC 2.7.2.8)	Acetylglutamate kinase (EC 2.7.2.8)	Metabolism	Amino Acids and Derivatives	Arginine; urea cycle, creatine, polyamines	Arginine biosynthesis via N-acetyl-L-citrulline
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2018	Acin_2086		N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)	Miscellaneous	Miscellaneous		Nickel-requiring
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2019	Acin_2087		Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Anaerobic module of TCA
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2022	Acin_2090	mutM	Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	DNA Processing	DNA Processing	DNA repair	DNA Repair Base Excision
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2023	Acin_2091	polA	DNA polymerase I (EC 2.7.7.7)	DNA polymerase I (EC 2.7.7.7)	DNA Processing	DNA Processing	DNA repair	DNA Repair Base Excision
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2028	Acin_2097		Arsenical-resistance protein ACR3	Arsenical-resistance protein ACR3	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Arsenic resistance
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2041	Acin_2110		Tripartite tricarboxylate transporter TctA family	Tripartite tricarboxylate transporter TctA family	Membrane Transport	Membrane Transport		Tricarboxylate transport system
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2070	Acin_2138	rpoC	DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in transcription
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2070	Acin_2138	rpoC	DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	RNA Processing	RNA Processing	Transcription	RNA polymerase, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2071	Acin_2139	rpoB	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in transcription
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2071	Acin_2139	rpoB	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	RNA Processing	RNA Processing	Transcription	RNA polymerase, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2077	Acin_2145		LSU ribosomal protein L27p	LSU ribosomal protein L27p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2077	Acin_2145		LSU ribosomal protein L27p	LSU ribosomal protein L27p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2080	Acin_2147	rplU	LSU ribosomal protein L21p	LSU ribosomal protein L21p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2080	Acin_2147	rplU	LSU ribosomal protein L21p	LSU ribosomal protein L21p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2082	Acin_2149	gatB	Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)	Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Asn
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2082	Acin_2149	gatB	Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)	Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Gln
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2083	Acin_2150	gatA	Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)	Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Asn
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2083	Acin_2150	gatA	Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)	Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Gln
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2084	Acin_2151	gatC	Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)	Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Asn
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2084	Acin_2151	gatC	Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)	Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Gln
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2087	Acin_2154	glyS	Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	Glycyl-tRNA synthetase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2087	Acin_2154	glyS	Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Gly
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2088	Acin_2155	glyQ	Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	Glycyl-tRNA synthetase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2088	Acin_2155	glyQ	Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	Protein Processing	Protein Synthesis	Aminoacyl-tRNA-synthetases	tRNA aminoacylation, Gly
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2096	Acin_2163	rpoD	RNA polymerase sigma factor RpoD	RNA polymerase sigma factor RpoD	Cellular Processes	Cell Cycle, Cell Division and Death		Macromolecular synthesis operon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2097	Acin_2164	dnaG	DNA primase (EC 2.7.7.-)	DNA primase DnaG	Cellular Processes	Cell Cycle, Cell Division and Death		Macromolecular synthesis operon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2099	Acin_2166		Phosphoenolpyruvate synthase regulatory protein	Phosphoenolpyruvate synthase regulatory protein	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2101	Acin_2168	ppsA	Phosphoenolpyruvate synthase (EC 2.7.9.2)	Phosphoenolpyruvate synthase (EC 2.7.9.2)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism I: anaplerotic reactions, PEP
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2119	Acin_2186	trpA	Tryptophan synthase alpha chain (EC 4.2.1.20)	Tryptophan synthase alpha chain (EC 4.2.1.20)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Tryptophan synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2120	Acin_2187	trpB	Tryptophan synthase beta chain (EC 4.2.1.20)	Tryptophan synthase beta chain (EC 4.2.1.20)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Tryptophan synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2121	Acin_2188	trpF	Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Tryptophan synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2122	Acin_2189	trpC	Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Indole-3-glycerol phosphate synthase (EC 4.1.1.48)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Tryptophan synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2123	Acin_2190	trpD	Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Anthranilate phosphoribosyltransferase (EC 2.4.2.18)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Tryptophan synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2125	Acin_2192	trpE	Anthranilate synthase, aminase component (EC 4.1.3.27)	Anthranilate synthase, aminase component (EC 4.1.3.27)	Metabolism	Amino Acids and Derivatives	Aromatic amino acids and derivatives	Tryptophan synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2137	Acin_2205		N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	"Diaminopimelate Synthesis "
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2137	Acin_2205		N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Metabolism	Amino Acids and Derivatives	Lysine, threonine, methionine, and cysteine	Lysine DAP biosynthetic pathway
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2140	Acin_2208	rplL	LSU ribosomal protein L7p/L12p (P1/P2)	LSU ribosomal protein L7p/L12p (P1/P2)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2140	Acin_2208	rplL	LSU ribosomal protein L7p/L12p (P1/P2)	LSU ribosomal protein L7p/L12p (P1/P2)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2141	Acin_2209	rplJ	LSU ribosomal protein L10p (P0)	LSU ribosomal protein L10p (P0)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2141	Acin_2209	rplJ	LSU ribosomal protein L10p (P0)	LSU ribosomal protein L10p (P0)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2142	Acin_2210	rplA	LSU ribosomal protein L1p (L10Ae)	LSU ribosomal protein L1p (L10Ae)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2142	Acin_2210	rplA	LSU ribosomal protein L1p (L10Ae)	LSU ribosomal protein L1p (L10Ae)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2143	Acin_2211	rplK	LSU ribosomal protein L11p (L12e)	LSU ribosomal protein L11p (L12e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2143	Acin_2211	rplK	LSU ribosomal protein L11p (L12e)	LSU ribosomal protein L11p (L12e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2146	Acin_2214	rpmG	LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-dependent	LSU ribosomal protein L33p, zinc-dependent	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2146	Acin_2214	rpmG	LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-dependent	LSU ribosomal protein L33p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2146	Acin_2214	rpmG	LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-dependent	LSU ribosomal protein L33p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2147	Acin_2215	tufA	Translation elongation factor Tu	Translation elongation factor Tu	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in protein synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2147	Acin_2215	tufA	Translation elongation factor Tu	Translation elongation factor Tu	Protein Processing	Protein Synthesis	Translation	Translation elongation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2147	Acin_2215	tufA	Translation elongation factor Tu	Translation elongation factor Tu	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2148	Acin_2216	bacA	Undecaprenyl-diphosphatase (EC 3.6.1.27)	Undecaprenyl-diphosphatase (EC 3.6.1.27)	Cell Envelope	Cell Envelope, Capsule and Slime layer	Peptidoglycan (Bacteria) or other polymers (Archaea)	Undecaprenyl-diphosphatases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2151	Acin_2219		RNA polymerase sporulation specific sigma factor SigH	RNA polymerase sporulation specific sigma factor SigH	Cellular Processes	Prokaryotic cell type differentiation	Sporulation	Sporulation-associated proteins with broader functions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2156	Acin_2224		RND efflux system, inner membrane transporter	RND efflux system, inner membrane transporter	Membrane Transport	Membrane Transport	Multidrug efflux systems	Tripartite multidrug efflux systems (of RND type) in Pseudomonas
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2157	Acin_2225		RND efflux system, membrane fusion protein	RND efflux system, membrane fusion protein	Membrane Transport	Membrane Transport	Multidrug efflux systems	Tripartite multidrug efflux systems (of RND type) in Pseudomonas
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2163	Acin_2231		Glutamine amidotransferase, class I	Glutamine amidotransferase, class I	Metabolism	Nucleosides and Nucleotides	Purines	GMP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2166	Acin_2234	metF	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Metabolism	Carbohydrates	CO2 fixation	Methylenetetrahydrofolate reductase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2166	Acin_2234	metF	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)	Metabolism	Carbohydrates	C-1 compound metabolism	One-carbon metabolism by tetrahydropterines
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2173	Acin_2243	ppk	Polyphosphate kinase (EC 2.7.4.1)	Polyphosphate kinase (EC 2.7.4.1)	Metabolism	Phosphate Metabolism		High affinity phosphate transporter and control of PHO regulon
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2180	Acin_2249		LrgA-associated membrane protein LrgB	LrgA-associated membrane protein LrgB	Cellular Processes	Cell Cycle, Cell Division and Death	Programmed Cell Death and Toxin-antitoxin Systems	Murein hydrolase regulation and cell death
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2181	Acin_2250		Antiholin-like protein LrgA	Antiholin-like protein LrgA	Cellular Processes	Cell Cycle, Cell Division and Death	Programmed Cell Death and Toxin-antitoxin Systems	Murein hydrolase regulation and cell death
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2187	Acin_2257	edd	Dihydroxy-acid dehydratase (EC 4.2.1.9)	Dihydroxy-acid dehydratase (EC 4.2.1.9)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2219	Acin_2290		Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	Pyruvate-flavodoxin oxidoreductase	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate:ferredoxin oxidoreductase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2224	Acin_2295		Ribosomal silencing factor RsfA	Ribosomal silencing factor RsfA	DNA Processing	DNA Processing	DNA uptake, competence	DNA internalization-related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2225	Acin_2296		Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily M	Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily M	Regulation And Cell Signaling	Regulation and Cell signaling		Cell envelope-associated LytR-CpsA-Psr transcriptional attenuators
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2229	Acin_2300	nadD	Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2229	Acin_2300	nadD	Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	NAD and NADP	NAD and NADP cofactor biosynthesis global
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2232	Acin_2303		GTP-binding and nucleic acid-binding protein YchF	GTP-binding and nucleic acid-binding protein YchF	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2233	Acin_2304		Mg/Co/Ni transporter MgtE, CBS domain-containing	Mg/Co/Ni transporter MgtE, CBS domain-containing	Membrane Transport	Membrane Transport	Cation transporters	Magnesium transport
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2240	Acin_2311	rplQ	LSU ribosomal protein L17p	LSU ribosomal protein L17p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2240	Acin_2311	rplQ	LSU ribosomal protein L17p	LSU ribosomal protein L17p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2241	Acin_2312	rpoA	DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)	DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)	RNA Processing	RNA Processing	Transcription	RNA polymerase, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2243			SSU ribosomal protein S11p (S14e)	SSU ribosomal protein S11p (S14e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2244	Acin_2315	rpsM	SSU ribosomal protein S13p (S18e)	SSU ribosomal protein S13p (S18e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2245			LSU ribosomal protein L36p @ LSU ribosomal protein L36p, zinc-dependent	LSU ribosomal protein L36p, zinc-dependent	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2245			LSU ribosomal protein L36p @ LSU ribosomal protein L36p, zinc-dependent	LSU ribosomal protein L36p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2245			LSU ribosomal protein L36p @ LSU ribosomal protein L36p, zinc-dependent	LSU ribosomal protein L36p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2246	Acin_2316		Translation initiation factor 1	Translation initiation factor 1	Cellular Processes	Cell Cycle, Cell Division and Death		Bacterial cell division related cluster 2
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2246	Acin_2316		Translation initiation factor 1	Translation initiation factor 1	Protein Processing	Protein Synthesis	Translation	Translation initiation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2249	Acin_2319	rplO	LSU ribosomal protein L15p (L27Ae)	LSU ribosomal protein L15p (L27Ae)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2249	Acin_2319	rplO	LSU ribosomal protein L15p (L27Ae)	LSU ribosomal protein L15p (L27Ae)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2250	Acin_2320	rpmD	LSU ribosomal protein L30p (L7e)	LSU ribosomal protein L30p (L7e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2251	Acin_2321	rpsE	SSU ribosomal protein S5p (S2e)	SSU ribosomal protein S5p (S2e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2252	Acin_2322	rplR	LSU ribosomal protein L18p (L5e)	LSU ribosomal protein L18p (L5e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2252	Acin_2322	rplR	LSU ribosomal protein L18p (L5e)	LSU ribosomal protein L18p (L5e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2253	Acin_2323	rplF	LSU ribosomal protein L6p (L9e)	LSU ribosomal protein L6p (L9e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2253	Acin_2323	rplF	LSU ribosomal protein L6p (L9e)	LSU ribosomal protein L6p (L9e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2254	Acin_2324	rpsH	SSU ribosomal protein S8p (S15Ae)	SSU ribosomal protein S8p (S15Ae)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2255	Acin_2325	rpsN	SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-dependent	SSU ribosomal protein S14p (S29e), zinc-dependent	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2255	Acin_2325	rpsN	SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-dependent	SSU ribosomal protein S14p (S29e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, zinc requirement
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2256	Acin_2326	rplE	LSU ribosomal protein L5p (L11e)	LSU ribosomal protein L5p (L11e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2256	Acin_2326	rplE	LSU ribosomal protein L5p (L11e)	LSU ribosomal protein L5p (L11e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2257	Acin_2327	rplX	LSU ribosomal protein L24p (L26e)	LSU ribosomal protein L24p (L26e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2257	Acin_2327	rplX	LSU ribosomal protein L24p (L26e)	LSU ribosomal protein L24p (L26e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2258	Acin_2328	rplN	LSU ribosomal protein L14p (L23e)	LSU ribosomal protein L14p (L23e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2258	Acin_2328	rplN	LSU ribosomal protein L14p (L23e)	LSU ribosomal protein L14p (L23e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2259	Acin_2329	rpsQ	SSU ribosomal protein S17p (S11e)	SSU ribosomal protein S17p (S11e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2260	Acin_2330	rpmC	LSU ribosomal protein L29p (L35e)	LSU ribosomal protein L29p (L35e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2260	Acin_2330	rpmC	LSU ribosomal protein L29p (L35e)	LSU ribosomal protein L29p (L35e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2261	Acin_2331	rplP	LSU ribosomal protein L16p (L10e)	LSU ribosomal protein L16p (L10e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2261	Acin_2331	rplP	LSU ribosomal protein L16p (L10e)	LSU ribosomal protein L16p (L10e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2262	Acin_2332	rpsC	SSU ribosomal protein S3p (S3e)	SSU ribosomal protein S3p (S3e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2263	Acin_2333	rplV	LSU ribosomal protein L22p (L17e)	LSU ribosomal protein L22p (L17e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2263	Acin_2333	rplV	LSU ribosomal protein L22p (L17e)	LSU ribosomal protein L22p (L17e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2264	Acin_2334	rpsS	SSU ribosomal protein S19p (S15e)	SSU ribosomal protein S19p (S15e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2265	Acin_2335	rplB	LSU ribosomal protein L2p (L8e)	LSU ribosomal protein L2p (L8e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2265	Acin_2335	rplB	LSU ribosomal protein L2p (L8e)	LSU ribosomal protein L2p (L8e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2266	Acin_2336	rplW	LSU ribosomal protein L23p (L23Ae)	LSU ribosomal protein L23p (L23Ae)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2266	Acin_2336	rplW	LSU ribosomal protein L23p (L23Ae)	LSU ribosomal protein L23p (L23Ae)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2267	Acin_2337	rplD	LSU ribosomal protein L4p (L1e)	LSU ribosomal protein L4p (L1e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2267	Acin_2337	rplD	LSU ribosomal protein L4p (L1e)	LSU ribosomal protein L4p (L1e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2268	Acin_2338	rplC	LSU ribosomal protein L3p (L3e)	LSU ribosomal protein L3p (L3e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2268	Acin_2338	rplC	LSU ribosomal protein L3p (L3e)	LSU ribosomal protein L3p (L3e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2269	Acin_2339	rpsJ	SSU ribosomal protein S10p (S20e)	SSU ribosomal protein S10p (S20e)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in protein synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2269	Acin_2339	rpsJ	SSU ribosomal protein S10p (S20e)	SSU ribosomal protein S10p (S20e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2270	Acin_2340	tufA	Translation elongation factor Tu	Translation elongation factor Tu	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in protein synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2270	Acin_2340	tufA	Translation elongation factor Tu	Translation elongation factor Tu	Protein Processing	Protein Synthesis	Translation	Translation elongation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2270	Acin_2340	tufA	Translation elongation factor Tu	Translation elongation factor Tu	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2271	Acin_2341		Translation elongation factor G	Translation elongation factor G	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in protein synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2271	Acin_2341		Translation elongation factor G	Translation elongation factor G	Protein Processing	Protein Synthesis	Translation	Translation elongation factors, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2271	Acin_2341		Translation elongation factor G	Translation elongation factor G	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2272	Acin_2342	rpsG	SSU ribosomal protein S7p (S5e)	SSU ribosomal protein S7p (S5e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2273	Acin_2343	rpsL	SSU ribosomal protein S12p (S23e)	SSU ribosomal protein S12p (S23e)	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Resistance to antibiotics and toxic compounds	Antibiotic targets in protein synthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2273	Acin_2343	rpsL	SSU ribosomal protein S12p (S23e)	SSU ribosomal protein S12p (S23e)	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein processing and modification	Ribosomal protein S12p Asp methylthiotransferase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2273	Acin_2343	rpsL	SSU ribosomal protein S12p (S23e)	SSU ribosomal protein S12p (S23e)	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2285	Acin_2356		ClpB protein	Chaperone protein ClpB (ATP-dependent unfoldase)	Protein Processing	Protein Fate (folding, modification, targeting, degradation)	Protein folding	Protein chaperones
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2294	Acin_2364		Aldehyde dehydrogenase (EC 1.2.1.3)	Aldehyde dehydrogenase (EC 1.2.1.3)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Methylglyoxal Metabolism
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2294	Acin_2364		Aldehyde dehydrogenase (EC 1.2.1.3)	Aldehyde dehydrogenase (EC 1.2.1.3)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2296	Acin_2366		Outer membrane protein A precursor	Outer membrane protein A precursor	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Osmotic stress	Osmoregulation
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2296	Acin_2366		Outer membrane protein A precursor	Outer membrane protein A precursor	Cell Envelope	Cell Envelope, Capsule and Slime layer	Gram-Negative (Diderm) cell wall components	Outer membrane
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2300	Acin_2369		Cold shock protein of CSP family	Cold shock protein of CSP family	Stress Response, Defense, Virulence	Stress Response, Defense and Virulence	Stress Response: Heat/cold shock	Cold shock proteins of CSP family
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2318	Acin_2388	tag	DNA-3-methyladenine glycosylase (EC 3.2.2.20)	DNA-3-methyladenine glycosylase (EC 3.2.2.20)	DNA Processing	DNA Processing	DNA repair	DNA Repair Base Excision
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2324	Acin_2394	serA	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Pyridoxine	Pyridoxin (Vitamin B6) Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2329	Acin_2399		hypothetical protein	RND efflux system, inner membrane transporter	Membrane Transport	Membrane Transport	Multidrug efflux systems	Tripartite multidrug efflux systems (of RND type) in Pseudomonas
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2334	Acin_2404	leuA	2-isopropylmalate synthase (EC 2.3.3.13)	2-isopropylmalate synthase (EC 2.3.3.13)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2335	Acin_2405	leuC	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2336	Acin_2406	leuD	3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2337	Acin_2407	leuB	3-isopropylmalate dehydrogenase (EC 1.1.1.85)	3-isopropylmalate dehydrogenase (EC 1.1.1.85)	Metabolism	Amino Acids and Derivatives	Branched-chain amino acids	Branched-Chain Amino Acid Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2340	Acin_2410	purA	Adenylosuccinate synthetase (EC 6.3.4.4)	Adenylosuccinate synthetase (EC 6.3.4.4)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2340	Acin_2410	purA	Adenylosuccinate synthetase (EC 6.3.4.4)	Adenylosuccinate synthetase (EC 6.3.4.4)	Metabolism	Amino Acids and Derivatives	Histidine Metabolism	Histidine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2341	Acin_2411	purB	Adenylosuccinate lyase (EC 4.3.2.2) @ SAICAR lyase (EC 4.3.2.2)	Adenylosuccinate lyase (EC 4.3.2.2)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2341	Acin_2411	purB	Adenylosuccinate lyase (EC 4.3.2.2) @ SAICAR lyase (EC 4.3.2.2)	SAICAR lyase (EC 4.3.2.2)	Metabolism	Nucleosides and Nucleotides	Purines	DeNovo Purine Biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2342	Acin_2412	dnaB	Replicative DNA helicase (DnaB) (EC 3.6.4.12)	Replicative DNA helicase (DnaB) (EC 3.6.4.12)	Energy	Energy and Precursor Metabolites Generation	Central Metabolism	Pyruvate Alanine Serine Interconversions
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2343	Acin_2413	rplI	LSU ribosomal protein L9p	LSU ribosomal protein L9p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosomal proteins, single-copy
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2343	Acin_2413	rplI	LSU ribosomal protein L9p	LSU ribosomal protein L9p	Protein Processing	Protein Synthesis	Ribosome biogenesis	Ribosome LSU, bacterial
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2346	Acin_2416	murI	Glutamate racemase (EC 5.1.1.3)	Glutamate racemase (EC 5.1.1.3)	Metabolism	Amino Acids and Derivatives		Amino acid racemase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2347	Acin_2417	ldh	L-lactate dehydrogenase (EC 1.1.1.27)	L-lactate dehydrogenase (EC 1.1.1.27)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Lactate
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2347	Acin_2417	ldh	L-lactate dehydrogenase (EC 1.1.1.27)	L-lactate dehydrogenase (EC 1.1.1.27)	Energy	Energy and Precursor Metabolites Generation	Fermentation	Fermentations: Mixed acid
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2354	Acin_2426	ansA	L-asparaginase I, cytoplasmic (EC 3.5.1.1)	L-asparaginase I, cytoplasmic (EC 3.5.1.1)	Metabolism	Metabolite damage and its repair or mitigation		Metabolite repair
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2355	Acin_2427	kbl	8-amino-7-oxononanoate synthase (EC 2.3.1.47)	8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin biosynthesis
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2355	Acin_2427	kbl	8-amino-7-oxononanoate synthase (EC 2.3.1.47)	8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Metabolism	Cofactors, Vitamins, Prosthetic Groups	Biotin	Biotin synthesis cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2368	Acin_2440		Chromosome (plasmid) partitioning protein ParB	Chromosome (plasmid) partitioning protein ParB		Clustering-based subsystems	Cell Division	Cell division related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2368	Acin_2440		Chromosome (plasmid) partitioning protein ParB	Chromosome (plasmid) partitioning protein ParB	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2369	Acin_2441		Chromosome (plasmid) partitioning protein ParA	Chromosome (plasmid) partitioning protein ParA		Clustering-based subsystems	Cell Division	Cell division related cluster
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2369	Acin_2441		Chromosome (plasmid) partitioning protein ParA	Chromosome (plasmid) partitioning protein ParA	Cellular Processes	Cell Cycle, Cell Division and Death		Two cell division clusters relating to chromosome partitioning
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2376	Acin_2448		tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG	tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG	RNA Processing	RNA Processing	RNA processing and modification	5-methylaminomethyl-2-thiouridine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2377	Acin_2449		tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE	tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE	RNA Processing	RNA Processing	RNA processing and modification	5-methylaminomethyl-2-thiouridine
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2377	Acin_2449		tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE	tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE	Protein Processing	Protein Synthesis		Universal GTPases
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2382	Acin_2453		Glutamine amidotransferase, class I	Glutamine amidotransferase, class I	Metabolism	Nucleosides and Nucleotides	Purines	GMP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2386	Acin_2457		Glutamine amidotransferase, class I	Glutamine amidotransferase, class I	Metabolism	Nucleosides and Nucleotides	Purines	GMP synthase
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2388	Acin_2460		Xanthine permease	Xanthine permease	Metabolism	Nucleosides and Nucleotides	Purines	IMP and Xanthine conversion to XMP and GMP module
  568816.4	Acidaminococcus intestini RyC-MR95	fig|568816.4.peg.2389	Acin_2461	xpt	Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Metabolism	Nucleosides and Nucleotides	Purines	IMP and Xanthine conversion to XMP and GMP module
  