text: -- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
  -- 
  -- Licensed under the Apache License, Version 2.0 (the "License");
  -- you may not use this file except in compliance with the License.
  -- You may obtain a copy of the License at
  -- 
  --      http://www.apache.org/licenses/LICENSE-2.0
  -- 
  -- Unless required by applicable law or agreed to in writing, software
  -- distributed under the License is distributed on an "AS IS" BASIS,
  -- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  -- See the License for the specific language governing permissions and
  -- limitations under the License.
  
  -- Updating the schema version
  UPDATE meta SET meta_value = 57 where meta_key = "schema_version";
  
  -- a partitioned table cannot have any keys but the primary key
  ALTER TABLE peptide_align_feature DROP KEY qgenome_db_id;
  ALTER TABLE peptide_align_feature DROP KEY hgenome_db_id;
  ALTER TABLE peptide_align_feature DROP KEY analysis_id;
  ALTER TABLE peptide_align_feature DROP KEY qmember_id;
  ALTER TABLE peptide_align_feature DROP KEY hmember_id;
  ALTER TABLE peptide_align_feature DROP KEY hmember_qgenome;
  ALTER TABLE peptide_align_feature DROP KEY qmember_hgenome;
  
  -- this table is used for production only
  DROP TABLE peptide_align_feature_prod;
  
  --   This table holds the sequence exon boundaries information
  CREATE TABLE sequence_exon_bounded (
    sequence_exon_bounded_id    int(10) unsigned NOT NULL auto_increment, # unique internal id
    member_id                   int(10) unsigned NOT NULL, # unique internal id
    length                      int(10) NOT NULL,
    sequence_exon_bounded       longtext NOT NULL,
  
    FOREIGN KEY (member_id) REFERENCES member(member_id),
  
    PRIMARY KEY (sequence_exon_bounded_id),
    KEY (member_id),
    KEY sequence_exon_bounded (sequence_exon_bounded(18))
  );
  
  