text: //
  // Created by Baoxing Song on 2019-04-02.
  //
  
  #ifndef WSA_SEED_H
  #define WSA_SEED_H
  #include <map>
  #include <string>
  #include <vector>
  #include <algorithm>
  #include <iostream>
  #include <set>
  #include "Score.h"
  #include "zdp.h"
  #include "SuffixTree.h"
  
  
  
  void seq2seed ( const char * seqAChar, const char * seqBChar, const int32_t & lengthSeqA, const int32_t & lengthSeqB, const int16_t * category,
                  const int8_t & initialSeedLength, const int8_t & initialSeedsScoreThreadsHold,
                  const std::string & outputFile, int16_t miniseedLength, Score & score,
                  const int64_t & numberOfSeedsForChain);
  
  #endif //WSA_SEED_H
  