text: // --------------------------------------------------------------------------
  //                   OpenMS -- Open-Source Mass Spectrometry
  // --------------------------------------------------------------------------
  // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
  // ETH Zurich, and Freie Universitaet Berlin 2002-2016.
  //
  // This software is released under a three-clause BSD license:
  //  * Redistributions of source code must retain the above copyright
  //    notice, this list of conditions and the following disclaimer.
  //  * Redistributions in binary form must reproduce the above copyright
  //    notice, this list of conditions and the following disclaimer in the
  //    documentation and/or other materials provided with the distribution.
  //  * Neither the name of any author or any participating institution
  //    may be used to endorse or promote products derived from this software
  //    without specific prior written permission.
  // For a full list of authors, refer to the file AUTHORS.
  // --------------------------------------------------------------------------
  // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
  // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
  // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
  // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
  // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
  // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
  // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
  // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
  // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  //
  // --------------------------------------------------------------------------
  // $Maintainer: Timo Sachsenberg $
  // $Authors: Lukas Mueller, Markus Mueller $
  // --------------------------------------------------------------------------
  //
  ///////////////////////////////////////////////////////////////////////////
  //
  //  PEAK DETECTION OF FOURIER TRANSFORME MS INSTRUMENT DATA
  //
  //  written by Markus Mueller, markus.mueller@imsb.biol.ethz.ch
  //  ( and Lukas Mueller, Lukas.Mueller@imsb.biol.ethz.ch)
  //  October 2005
  //
  //  Ported to OpenMS by Florian Zeller, florian.zeller@bsse.ethz.ch
  //  December 2010
  //
  //  Group of Prof. Ruedi Aebersold, IMSB, ETH Hoenggerberg, Zurich
  //
  //
  
  #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_BACKGROUNDINTENSITYBIN_H
  #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_BACKGROUNDINTENSITYBIN_H
  
  #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h>
  
  #include <vector>
  #include <map>
  
  namespace OpenMS
  {
  
    class MSPeak;
  
    class SUPERHIRN_DLLAPI BackgroundIntensityBin
    {
  
  private:
  
      // do not allow default constructor
      BackgroundIntensityBin()
      {
      }
  
      // mz and tr coordinates of the bin:
      double mzCoord_;
      double trCoord_;
      double zCoord_;
  
      std::vector<double> intensityMap_;
      std::map<double, double> intensityHist_;
  
      double mean_;
      void computeIntensityHist();
  
  public:
  
      virtual ~BackgroundIntensityBin();
  
      // copy constructor
      BackgroundIntensityBin(const BackgroundIntensityBin &);
  
      // assignment operator
      BackgroundIntensityBin & operator=(const BackgroundIntensityBin &);
  
      BackgroundIntensityBin(double, double);
  
      /*
       * @brief Check if a peak belongs to this intensity bin
       */
      bool checkBelonging(MSPeak *);
  
      /*
       * @brief Add intensity to BackgroundIntensityBin
       */
      void addIntensity(double);
  
      /*
       * @brief add peak to BackgroundIntensityBin
       */
      void addMSPeak(MSPeak *);
      /*
       * @brief Process collected intensities in the map
       */
      void processIntensities();
  
      std::vector<double> * getIntensityMap();
      std::map<double, double> * getIntensityHist();
      double getMean();
    };
  
  } // ns
  
  #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_BACKGROUNDINTENSITYBIN_H
  