text: #!/usr/bin/python
  import sys
  import argparse
  from pbsuite.utils import VCFIO
  
  USAGE = "Turn .spots results into a .bed"
  
  if __name__ == '__main__':
      parser = argparse.ArgumentParser(description=USAGE, \
                  formatter_class=argparse.RawDescriptionHelpFormatter)
      parser.add_argument("input", metavar="SPOTS", default='-', nargs="?", \
                          help="Results to convert (stdin)")
      parser.add_argument("-b", "--brief", action="store_true",\
                          help="Only output columns 1-4 of .bed")
      
      args = parser.parse_args()
      if args.input == '-':
          fh = sys.stdin
      else:
          fh = open(args.input,'r')
         
      for line in fh.readlines():
          if line.startswith("##"):
              continue
          elif line.startswith("#"):
              h = line.strip()[1:]
              header = {}
              for pos, item in enumerate(h.split('\t')):
                  header[item] = pos
              continue
          chrom, s, e, type, size, info = line.strip().split('\t')
          name = "%s.%s" % (type, size)
          print "\t".join([chrom, s, e, name, type, size])
      fh.close()
              
              
  
  