text: /* taxonXref.c was originally generated by the autoSql program, which also 
   * generated taxonXref.h and taxonXref.sql.  This module links the database and
   * the RAM representation of objects. */
  
  #include "common.h"
  #include "linefile.h"
  #include "dystring.h"
  #include "jksql.h"
  #include "taxonXref.h"
  
  
  void taxonXrefStaticLoad(char **row, struct taxonXref *ret)
  /* Load a row from taxonXref table into ret.  The contents of ret will
   * be replaced at the next call to this function. */
  {
  
  ret->organism = row[0];
  ret->taxon = sqlUnsigned(row[1]);
  ret->name = row[2];
  ret->toGenus = row[3];
  }
  
  struct taxonXref *taxonXrefLoad(char **row)
  /* Load a taxonXref from row fetched with select * from taxonXref
   * from database.  Dispose of this with taxonXrefFree(). */
  {
  struct taxonXref *ret;
  
  AllocVar(ret);
  ret->organism = cloneString(row[0]);
  ret->taxon = sqlUnsigned(row[1]);
  ret->name = cloneString(row[2]);
  ret->toGenus = cloneString(row[3]);
  return ret;
  }
  
  struct taxonXref *taxonXrefLoadAll(char *fileName) 
  /* Load all taxonXref from a whitespace-separated file.
   * Dispose of this with taxonXrefFreeList(). */
  {
  struct taxonXref *list = NULL, *el;
  struct lineFile *lf = lineFileOpen(fileName, TRUE);
  char *row[4];
  
  while (lineFileRow(lf, row))
      {
      el = taxonXrefLoad(row);
      slAddHead(&list, el);
      }
  lineFileClose(&lf);
  slReverse(&list);
  return list;
  }
  
  struct taxonXref *taxonXrefLoadAllByChar(char *fileName, char chopper) 
  /* Load all taxonXref from a chopper separated file.
   * Dispose of this with taxonXrefFreeList(). */
  {
  struct taxonXref *list = NULL, *el;
  struct lineFile *lf = lineFileOpen(fileName, TRUE);
  char *row[4];
  
  while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
      {
      el = taxonXrefLoad(row);
      slAddHead(&list, el);
      }
  lineFileClose(&lf);
  slReverse(&list);
  return list;
  }
  
  struct taxonXref *taxonXrefLoadByQuery(struct sqlConnection *conn, char *query)
  /* Load all taxonXref from table that satisfy the query given.  
   * Where query is of the form 'select * from example where something=something'
   * or 'select example.* from example, anotherTable where example.something = 
   * anotherTable.something'.
   * Dispose of this with taxonXrefFreeList(). */
  {
  struct taxonXref *list = NULL, *el;
  struct sqlResult *sr;
  char **row;
  
  sr = sqlGetResult(conn, query);
  while ((row = sqlNextRow(sr)) != NULL)
      {
      el = taxonXrefLoad(row);
      slAddHead(&list, el);
      }
  slReverse(&list);
  sqlFreeResult(&sr);
  return list;
  }
  
  void taxonXrefSaveToDb(struct sqlConnection *conn, struct taxonXref *el, char *tableName, int updateSize)
  /* Save taxonXref as a row to the table specified by tableName. 
   * As blob fields may be arbitrary size updateSize specifies the approx size
   * of a string that would contain the entire query. Arrays of native types are
   * converted to comma separated strings and loaded as such, User defined types are
   * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
  {
  struct dyString *update = newDyString(updateSize);
  sqlDyStringPrintf(update, "insert into %s values ( '%s',%u,'%s','%s')", 
  	tableName,  el->organism,  el->taxon,  el->name,  el->toGenus);
  sqlUpdate(conn, update->string);
  freeDyString(&update);
  }
  
  
  struct taxonXref *taxonXrefCommaIn(char **pS, struct taxonXref *ret)
  /* Create a taxonXref out of a comma separated string. 
   * This will fill in ret if non-null, otherwise will
   * return a new taxonXref */
  {
  char *s = *pS;
  
  if (ret == NULL)
      AllocVar(ret);
  ret->organism = sqlStringComma(&s);
  ret->taxon = sqlUnsignedComma(&s);
  ret->name = sqlStringComma(&s);
  ret->toGenus = sqlStringComma(&s);
  *pS = s;
  return ret;
  }
  
  void taxonXrefFree(struct taxonXref **pEl)
  /* Free a single dynamically allocated taxonXref such as created
   * with taxonXrefLoad(). */
  {
  struct taxonXref *el;
  
  if ((el = *pEl) == NULL) return;
  freeMem(el->organism);
  freeMem(el->name);
  freeMem(el->toGenus);
  freez(pEl);
  }
  
  void taxonXrefFreeList(struct taxonXref **pList)
  /* Free a list of dynamically allocated taxonXref's */
  {
  struct taxonXref *el, *next;
  
  for (el = *pList; el != NULL; el = next)
      {
      next = el->next;
      taxonXrefFree(&el);
      }
  *pList = NULL;
  }
  
  void taxonXrefOutput(struct taxonXref *el, FILE *f, char sep, char lastSep) 
  /* Print out taxonXref.  Separate fields with sep. Follow last field with lastSep. */
  {
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->organism);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  fprintf(f, "%u", el->taxon);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->name);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->toGenus);
  if (sep == ',') fputc('"',f);
  fputc(lastSep,f);
  }
  
  /* -------------------------------- End autoSql Generated Code -------------------------------- */
  
  