text: """
  
  Functions for manipulating xyz files.
  
  
  """
  
  import os
  import numpy as np 
  
  
  
  
  def open_xyz(file_location):
      """
      Open an xyz file and return symbols and coordinates.
  
      Parameters
      ----------
      file_location : str
  
      Returns
      -------
      symbols, coords : np.ndarray
      """
      xyz_file = np.genfromtxt(fname=file_location, skip_header=2, dtype='unicode')
      symbols = xyz_file[:,0]
      coords = (xyz_file[:,1:])
      coords = coords.astype(np.float)
      return symbols, coords
  
  def write_xyz(file_location, symbols, coordinates):
      
      # Write an xyz file given a file location, symbols, and coordinates.
      num_atoms = len(symbols)
      
      with open(file_location, 'w+') as f:
          f.write('{}\n'.format(num_atoms))
          f.write('XYZ file\n')
          
          for i in range(num_atoms):
              f.write('{}\t{}\t{}\t{}\n'.format(symbols[i], 
                                                coordinates[i,0], coordinates[i,1], coordinates[i,2]))
  