text: #!/usr/local/bin/python
  '''
  This script will build a TF-binding matrix from human dnase clusters, enabling you to analyze
  any type of gene expression data
  '''
  
  __author__='Sara JG Gosline'
  __email__='sgosline@mit.edu'
  
  import os
  from optparse import OptionParser
  
  if __name__=='__main__':
      parser=OptionParser()
      opts,args=parser.parse_args()
      
      #garnet requires a configuration file that has all the data
      garnet_out='dnase_output'
      garnet_conf='dnaseClus_garnet.cfg' #provided config file
      gcmd='python ../../scripts/garnet.py --outdir=%s %s'%(garnet_out,garnet_conf) #command
      
      
      ##now ready to run commands
          
      print gcmd
      os.system(gcmd)
  
      
  