text: /* mouseOrtho.c was originally generated by the autoSql program, which also 
   * generated mouseOrtho.h and mouseOrtho.sql.  This module links the database and
   * the RAM representation of objects. */
  
  #include "common.h"
  #include "linefile.h"
  #include "dystring.h"
  #include "jksql.h"
  #include "mouseOrtho.h"
  
  static char const rcsid[] = "$Id: mouseOrtho.c,v 1.4 2005/04/13 06:25:55 markd Exp $";
  
  void mouseOrthoStaticLoad(char **row, struct mouseOrtho *ret)
  /* Load a row from mouseOrtho table into ret.  The contents of ret will
   * be replaced at the next call to this function. */
  {
  
  ret->chrom = row[0];
  ret->chromStart = sqlUnsigned(row[1]);
  ret->chromEnd = sqlUnsigned(row[2]);
  ret->name = row[3];
  ret->score = sqlUnsigned(row[4]);
  ret->strand = row[5];
  ret->thickStart = sqlUnsigned(row[6]);
  ret->thickEnd = sqlUnsigned(row[7]);
  }
  
  struct mouseOrtho *mouseOrthoLoad(char **row)
  /* Load a mouseOrtho from row fetched with select * from mouseOrtho
   * from database.  Dispose of this with mouseOrthoFree(). */
  {
  struct mouseOrtho *ret;
  
  AllocVar(ret);
  ret->chrom = cloneString(row[0]);
  ret->chromStart = sqlUnsigned(row[1]);
  ret->chromEnd = sqlUnsigned(row[2]);
  ret->name = cloneString(row[3]);
  ret->score = sqlUnsigned(row[4]);
  ret->strand = cloneString(row[5]);
  ret->thickStart = sqlUnsigned(row[6]);
  ret->thickEnd = sqlUnsigned(row[7]);
  return ret;
  }
  
  struct mouseOrtho *mouseOrthoLoadAll(char *fileName) 
  /* Load all mouseOrtho from a tab-separated file.
   * Dispose of this with mouseOrthoFreeList(). */
  {
  struct mouseOrtho *list = NULL, *el;
  struct lineFile *lf = lineFileOpen(fileName, TRUE);
  char *row[8];
  
  while (lineFileRow(lf, row))
      {
      el = mouseOrthoLoad(row);
      slAddHead(&list, el);
      }
  lineFileClose(&lf);
  slReverse(&list);
  return list;
  }
  
  struct mouseOrtho *mouseOrthoLoadWhere(struct sqlConnection *conn, char *table, char *where)
  /* Load all mouseOrtho from table that satisfy where clause. The
   * where clause may be NULL in which case whole table is loaded
   * Dispose of this with mouseOrthoFreeList(). */
  {
  struct mouseOrtho *list = NULL, *el;
  struct dyString *query = dyStringNew(256);
  struct sqlResult *sr;
  char **row;
  
  dyStringPrintf(query, "select * from %s", table);
  if (where != NULL)
      dyStringPrintf(query, " where %s", where);
  sr = sqlGetResult(conn, query->string);
  while ((row = sqlNextRow(sr)) != NULL)
      {
      el = mouseOrthoLoad(row);
      slAddHead(&list, el);
      }
  slReverse(&list);
  sqlFreeResult(&sr);
  dyStringFree(&query);
  return list;
  }
  
  struct mouseOrtho *mouseOrthoCommaIn(char **pS, struct mouseOrtho *ret)
  /* Create a mouseOrtho out of a comma separated string. 
   * This will fill in ret if non-null, otherwise will
   * return a new mouseOrtho */
  {
  char *s = *pS;
  
  if (ret == NULL)
      AllocVar(ret);
  ret->chrom = sqlStringComma(&s);
  ret->chromStart = sqlUnsignedComma(&s);
  ret->chromEnd = sqlUnsignedComma(&s);
  ret->name = sqlStringComma(&s);
  ret->score = sqlUnsignedComma(&s);
  ret->strand = sqlStringComma(&s);
  ret->thickStart = sqlUnsignedComma(&s);
  ret->thickEnd = sqlUnsignedComma(&s);
  *pS = s;
  return ret;
  }
  
  void mouseOrthoFree(struct mouseOrtho **pEl)
  /* Free a single dynamically allocated mouseOrtho such as created
   * with mouseOrthoLoad(). */
  {
  struct mouseOrtho *el;
  
  if ((el = *pEl) == NULL) return;
  freeMem(el->chrom);
  freeMem(el->name);
  freeMem(el->strand);
  freez(pEl);
  }
  
  void mouseOrthoFreeList(struct mouseOrtho **pList)
  /* Free a list of dynamically allocated mouseOrtho's */
  {
  struct mouseOrtho *el, *next;
  
  for (el = *pList; el != NULL; el = next)
      {
      next = el->next;
      mouseOrthoFree(&el);
      }
  *pList = NULL;
  }
  
  void mouseOrthoOutput(struct mouseOrtho *el, FILE *f, char sep, char lastSep) 
  /* Print out mouseOrtho.  Separate fields with sep. Follow last field with lastSep. */
  {
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->chrom);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  fprintf(f, "%u", el->chromStart);
  fputc(sep,f);
  fprintf(f, "%u", el->chromEnd);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->name);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  fprintf(f, "%u", el->score);
  fputc(sep,f);
  if (sep == ',') fputc('"',f);
  fprintf(f, "%s", el->strand);
  if (sep == ',') fputc('"',f);
  fputc(sep,f);
  fprintf(f, "%u", el->thickStart);
  fputc(sep,f);
  fprintf(f, "%u", el->thickEnd);
  fputc(lastSep,f);
  }
  
  