text: #ifndef KALLISTO_PROCESSREADS_H
  #define KALLISTO_PROCESSREADS_H
  
  #include <zlib.h>
  #include "kseq.h"
  #include <string>
  #include <vector>
  #include <unordered_map>
  #include <algorithm>
  
  #include <iostream>
  #include <fstream>
  #include "MinCollector.h"
  
  #include "common.h"
  
  #ifndef KSEQ_INIT_READY
  #define KSEQ_INIT_READY
  KSEQ_INIT(gzFile, gzread)
  #endif
  
  
  int ProcessReads(KmerIndex& index, const ProgramOptions& opt, MinCollector& tc);
  
  #endif // KALLISTO_PROCESSREADS_H
  