text: // $Id: recognizeFormat.h 962 2006-11-07 15:13:34Z privmane $
  
  #ifndef ___RECOGNIZE_FORMAT
  #define ___RECOGNIZE_FORMAT
  
  #include "sequenceContainer.h"
  
  class recognizeFormat{
  public:
  	static sequenceContainer read(istream &infile, const alphabet* alph);
  	static void write(ostream &out, const sequenceContainer& sd);
  	//readUnAligned: the input sequences do not need to be aligned (not all sequences are the same length).
  	static sequenceContainer readUnAligned(istream &infile, const alphabet* alph);
  };
  
  #endif
  
  
  
  