text: // --------------------------------------------------------------------------
  //                   OpenMS -- Open-Source Mass Spectrometry
  // --------------------------------------------------------------------------
  // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
  // ETH Zurich, and Freie Universitaet Berlin 2002-2020.
  //
  // This software is released under a three-clause BSD license:
  //  * Redistributions of source code must retain the above copyright
  //    notice, this list of conditions and the following disclaimer.
  //  * Redistributions in binary form must reproduce the above copyright
  //    notice, this list of conditions and the following disclaimer in the
  //    documentation and/or other materials provided with the distribution.
  //  * Neither the name of any author or any participating institution
  //    may be used to endorse or promote products derived from this software
  //    without specific prior written permission.
  // For a full list of authors, refer to the file AUTHORS.
  // --------------------------------------------------------------------------
  // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
  // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
  // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
  // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
  // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
  // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
  // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
  // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
  // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  //
  // --------------------------------------------------------------------------
  // $Maintainer: Timo Sachsenberg $
  // $Authors: Andreas Bertsch $
  // --------------------------------------------------------------------------
  
  #pragma once
  
  #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h>
  
  namespace OpenMS
  {
    class InterpolationModel;
  
    /**
      @brief FeatureFinderAlgorithm for MRM experiments.
  
      @experimental This tool has not been tested thoroughly and might behave not as expected!
  
      This very simple algorithm has mainly been tested on data generated
      on an ABI/SCIEX QTrap 4000. Maybe this algorithm cannot be directly
      applied on data generated by other mass spectrometers.
  
      Precursor m/z information (Q1) is stored in the "MZ" metavalue of each feature!
      The feature's m/z itself is the Q3's ion m/z.
  
      @htmlinclude OpenMS_FeatureFinderAlgorithmMRM.parameters
  
      @ingroup FeatureFinder
    */
    class OPENMS_DLLAPI FeatureFinderAlgorithmMRM :
      public FeatureFinderAlgorithm,
      public FeatureFinderDefs
    {
  public:
      ///@name Type definitions
      //@{
      typedef FeatureFinderAlgorithm::MapType MapType;
      typedef MapType::SpectrumType SpectrumType;
      typedef SpectrumType::FloatDataArrays FloatDataArrays;
      //@}
  
      using FeatureFinderAlgorithm::param_;
      using FeatureFinderAlgorithm::features_;
      using FeatureFinderAlgorithm::ff_;
      using FeatureFinderAlgorithm::defaults_;
      using FeatureFinderAlgorithm::map_;
  
  public:
  
      enum
      {
        RT = Peak2D::RT,
        MZ = Peak2D::MZ
      };
  
      /// default constructor
      FeatureFinderAlgorithmMRM();
  
      /// Main method for actual FeatureFinder
      void run() override;
  
      static FeatureFinderAlgorithm* create();
  
      static const String getProductName();
  
  protected:
  
      double fitRT_(std::vector<Peak1D>& rt_input_data, std::unique_ptr<InterpolationModel>& model) const;
  
      //Docu in base class
      void updateMembers_() override;
    };
  
  } // namespace OpenMS
  
  