text: /*
   *                             The MIT License
   *
   * Wavefront Alignments Algorithms
   * Copyright (c) 2017 by Santiago Marco-Sola  <santiagomsola@gmail.com>
   *
   * This file is part of Wavefront Alignments Algorithms.
   *
   * Permission is hereby granted, free of charge, to any person obtaining a copy
   * of this software and associated documentation files (the "Software"), to deal
   * in the Software without restriction, including without limitation the rights
   * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
   * copies of the Software, and to permit persons to whom the Software is
   * furnished to do so, subject to the following conditions:
   *
   * The above copyright notice and this permission notice shall be included in all
   * copies or substantial portions of the Software.
   *
   * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
   * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
   * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
   * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
   * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
   * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
   * SOFTWARE.
   *
   * PROJECT: Wavefront Alignments Algorithms
   * AUTHOR(S): Santiago Marco-Sola <santiagomsola@gmail.com>
   * DESCRIPTION: Gap-lineal alignment algorithms wrapper
   */
  
  #include "WFA/benchmark/benchmark_gap_lineal.h"
  #include "WFA/gap_lineal/nw.h"
  
  /*
   * Benchmark NW
   */
  void benchmark_gap_lineal_nw(
      align_input_t* const align_input,
      lineal_penalties_t* const penalties) {
    // Allocate
    edit_table_t edit_table;
    edit_table_allocate(
        &edit_table,align_input->pattern_length,
        align_input->text_length,align_input->mm_allocator);
    // Align
    timer_start(&align_input->timer);
    nw_compute(&edit_table,
        align_input->pattern,align_input->pattern_length,
        align_input->text,align_input->text_length,
        penalties);
    timer_stop(&align_input->timer);
    // Free
    edit_table_free(&edit_table,align_input->mm_allocator);
  }
  