text: # Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
  # Spack Project Developers. See the top-level COPYRIGHT file for details.
  #
  # SPDX-License-Identifier: (Apache-2.0 OR MIT)
  
  from spack import *
  
  
  class Orthomcl(Package):
      """OrthoMCL is a genome-scale algorithm for grouping orthologous protein
         sequences."""
  
      homepage = "http://orthomcl.org/orthomcl/"
      url      = "http://orthomcl.org/common/downloads/software/v2.0/orthomclSoftware-v2.0.9.tar.gz"
  
      version('2.0.9', sha256='5f96d23ff255778535c4926d75b19f059db0c01be1ac599289d2431115d68640')
  
      depends_on('perl', type=('build', 'run'))
      depends_on('blast-plus')
      depends_on('mcl')
      depends_on('mariadb')
  
      def install(self, spec, prefix):
          install_tree('bin', prefix.bin)
          install_tree('config', prefix.config)
          install_tree('doc', prefix.doc)
          install_tree('lib', prefix.lib)
  
      def setup_run_environment(self, env):
          env.prepend_path('PERL5LIB', self.prefix.lib)
  