text: /*
   * Copyright [1999-2017] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
   * 
   * Licensed under the Apache License, Version 2.0 (the "License");
   * you may not use this file except in compliance with the License.
   * You may obtain a copy of the License at
   * 
   *      http://www.apache.org/licenses/LICENSE-2.0
   * 
   * Unless required by applicable law or agreed to in writing, software
   * distributed under the License is distributed on an "AS IS" BASIS,
   * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   * See the License for the specific language governing permissions and
   * limitations under the License.
   */
  
  #ifndef __SYNTENYREGIONADAPTOR_H__
  #define __SYNTENYREGIONADAPTOR_H__
  
  #include "BaseComparaAdaptor.h"
  #include "ComparaAdaptorTypes.h"
  #include "SyntenyRegion.h"
  #include "Vector.h"
  
  
  struct SyntenyRegionAdaptorStruct {
    BASECOMPARAADAPTOR_DATA
  };
  
  SyntenyRegionAdaptor *SyntenyRegionAdaptor_new(ComparaDBAdaptor *dba);
  SyntenyRegion *SyntenyRegionAdaptor_newRegionFromArray(SyntenyRegionAdaptor *sra, IDType dbID,
                                              IDType cluster, IDType dnaFrag,int start,int end);
  SyntenyRegion *SyntenyRegionAdaptor_fetchByDbID(SyntenyRegionAdaptor *sra, IDType dbID);
  
  Vector *SyntenyRegionAdaptor_fetchByClusterId(SyntenyRegionAdaptor *sra, IDType clusterId);
  IDType SyntenyRegionAdaptor_store(SyntenyRegionAdaptor *sra, IDType clusterId, SyntenyRegion *region);
  
  
  
  #endif
  