Sure, here is the code to customize the script to move files based on any file types you want:

```python
import os
import shutil

# Prompt the user for the source and destination paths
source_path = input("Enter the source path: ")
destination_path = input("Enter the destination path: ")

# Define a dictionary of file types and their corresponding folder names
file_types = {}
while True:
    extension = input("Enter a file extension (or press Enter to finish): ")
    if extension == "":
        break
    folder_name = input("Enter a folder name for the extension: ")
    file_types[extension] = folder_name

# Create the destination folders
for folder_name in file_types.values():
    folder_path = os.path.join(destination_path, folder_name)
    os.makedirs(folder_path, exist_ok=True)

# Loop through the files in the source directory
for file_name in os.listdir(source_path):
    file_path = os.path.join(source_path, file_name)
    if os.path.isfile(file_path):
        # Get the file extension and corresponding folder name
        file_extension = os.path.splitext(file_name)[1].lower()
        if file_extension in file_types:
            folder_name = file_types[file_extension]
            # Move the file to the corresponding destination folder
            destination_folder = os.path.join(destination_path, folder_name)
            shutil.move(file_path, destination_folder)
            print(f"Moved {file_name} to {destination_folder}")
```

This script will prompt the user for the source and destination paths, and then allow the user to enter a list of file extensions and their corresponding folder names. The script will then create the destination folders, and move all of the files in the source directory to the corresponding destination folder.

To answer your question, no, this script will not mess up the sorting process. Each file will be moved to the folder that corresponds to its file extension. For example, all of the .txt files will be moved to the "Text Files" folder, all of the .docx files will be moved to the "Word Documents" folder, and so on.
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