PathogenicityFilter implements VariantFilter { @JsonProperty public boolean keepNonPathogenic() { return keepNonPathogenic; } PathogenicityFilter(boolean keepNonPathogenic); @JsonProperty boolean keepNonPathogenic(); @Override FilterType getFilterType(); @Override FilterResult runFilter(VariantEvaluation variantEvaluation); @Override int hashCode(); @Override boolean equals(Object obj); @Override String toString();  }
@Test public void test() { assertThat(instance.keepNonPathogenic(), equalTo(PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS)); }