CDKRMapHandler { public void setTimeoutFlag(boolean timeoutFlag) { this.timeoutFlag = timeoutFlag; } CDKRMapHandler(); IAtomContainer getSource(); void setSource(IAtomContainer aSource); IAtomContainer getTarget(); void setTarget(IAtomContainer aTarget); void calculateOverlapsAndReduce(IAtomContainer molecule1, IAtomContainer molecule2, boolean shouldMatchBonds); void calculateOverlapsAndReduceExactMatch(IAtomContainer molecule1, IAtomContainer molecule2,
            boolean shouldMatchBonds); void calculateSubGraphs(IAtomContainer molecule1, IAtomContainer molecule2, boolean shouldMatchBonds); void calculateIsomorphs(IAtomContainer molecule1, IAtomContainer molecule2, boolean shouldMatchBonds); List<Map<Integer, Integer>> getMappings(); void setMappings(List<Map<Integer, Integer>> mappings); boolean isTimeoutFlag(); void setTimeoutFlag(boolean timeoutFlag);  }
@Test public void testSetTimeoutFlag() { boolean timeoutFlag = false; CDKRMapHandler instance = new CDKRMapHandler(); instance.setTimeoutFlag(timeoutFlag); Assert.assertNotSame(true, instance.isTimeoutFlag()); }