PopulateUnknown { PopulateUnknown(final CobaltChromosomes cobaltChromosomes) { this.cobaltChromosomes = cobaltChromosomes; } PopulateUnknown(final CobaltChromosomes cobaltChromosomes);   }
@Test public void testJoinUnknownRegions() { final CobaltChromosomes female = CobaltChromosomesTest.female(); final CombinedRegion region1 = ExtendLongArmTest.createCombinedRegion(1, 1000, 0, 0, SegmentSupport.NONE); final CombinedRegion region2 = ExtendLongArmTest.createCombinedRegion(1001, 2000, 0, 0, SegmentSupport.NONE); final CombinedRegion region3 = ExtendLongArmTest.createCombinedRegion(2001, 3000, 0, 0, SegmentSupport.NONE); final CombinedRegion region4 = ExtendLongArmTest.createCombinedRegion(3001, 4000, 0, 0, SegmentSupport.NONE); region4.setTumorCopyNumber(CopyNumberMethod.BAF_WEIGHTED, 2); final PopulateUnknown victim = new PopulateUnknown(female); List<CombinedRegion> result = victim.populateUnknown(Lists.newArrayList(region1, region2, region3, region4)); assertEquals(2, result.size()); }