GuanUberbacher extends AnchoredPairwiseSequenceAligner<S, C> { public GuanUberbacher() { } GuanUberbacher();  GuanUberbacher(S query, S target, GapPenalty gapPenalty, SubstitutionMatrix<C> subMatrix);  GuanUberbacher(S query, S target, GapPenalty gapPenalty, SubstitutionMatrix<C> subMatrix,
            int cutsPerSection);   }
@Test public void testGuanUberbacher() { GuanUberbacher<ProteinSequence, AminoAcidCompound> gu = new GuanUberbacher<ProteinSequence, AminoAcidCompound>(); gu.setQuery(query); gu.setTarget(target); gu.setGapPenalty(gaps); gu.setSubstitutionMatrix(blosum62); assertEquals(gu.getScore(), alignment.getScore()); }