HmfExonPanelBed { @SuppressWarnings("WeakerAccess") public static void write19File(@NotNull final String filename, @NotNull final String genePanelFile) throws IOException { List<DriverGene> driverGenes = DriverGeneFile.read(genePanelFile); DriverGenePanel genePanel = DriverGenePanelFactory.create(DriverGenePanelAssembly.HG19, driverGenes); writeBedFile(filename, Strings.EMPTY, createRegions(genePanel, HmfGenePanelSupplier.allGeneList37())); }  @SuppressWarnings("WeakerAccess") static void write19File(@NotNull final String filename, @NotNull final String genePanelFile); @SuppressWarnings("WeakerAccess") static void write38File(@NotNull final String filename, @NotNull final String genePanelFile);  }
@Test @Ignore public void write19() throws IOException { String filename = "/Users/jon/hmf/resources/ActionableCodingPanel.hg19.bed"; String genePanel = "/Users/jon/hmf/repos/hmftools/hmf-common/src/main/resources/drivercatalog/DriverGenePanel.tsv"; HmfExonPanelBed.write19File(filename, genePanel); BEDFileLoader.fromBedFile(filename); }