Input: [Name] PAX6-014 [Transcript ID] ENST00000471303 [bp] 782 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-027 [Transcript ID] ENST00000531910 [bp] 643 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-015 [Transcript ID] ENST00000481563 [bp] 613 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-028 [Transcript ID] ENST00000530373 [bp] 572 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-025 [Transcript ID] ENST00000530714 [bp] 567 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-024 [Transcript ID] ENST00000534353 [bp] 540 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-019 [Transcript ID] ENST00000533333 [bp] 6173 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-006 [Transcript ID] ENST00000470027 [bp] 2842 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-007 [Transcript ID] ENST00000494377 [bp] 2460 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-010 [Transcript ID] ENST00000464174 [bp] 979 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-017 [Transcript ID] ENST00000474783 [bp] 702 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-030 [Transcript ID] ENST00000532916 [bp] 627 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-026 [Transcript ID] ENST00000534390 [bp] 578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-023 [Transcript ID] ENST00000532175 [bp] 524 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] PAX6-022 [Transcript ID] ENST00000527769 [bp] 487 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-027 (ENST00000531910)


Input: [Name] STAT2-002 [Transcript ID] ENST00000314128 [bp] 3259 [Protein] 851aa [Translation ID] ENSP00000315768 [CCDS] CCDS8917 [UniProt] P52630 R9QE65 [RefSeq] NM_005419 NP_005410 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-001 [Transcript ID] ENST00000557235 [bp] 3073 [Protein] 847aa [Translation ID] ENSP00000450751 [CCDS] CCDS55836 [UniProt] P52630 [RefSeq] NM_198332 NP_938146 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-004 [Transcript ID] ENST00000418572 [bp] 1548 [Protein] 460aa [Translation ID] ENSP00000387354 [CCDS] - [UniProt] B4DLC8 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-009 [Transcript ID] ENST00000555646 [bp] 603 [Protein] 65aa [Translation ID] ENSP00000450985 [CCDS] - [UniProt] G3V319 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-008 [Transcript ID] ENST00000556539 [bp] 3278 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-012 [Transcript ID] ENST00000557252 [bp] 717 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-010 [Transcript ID] ENST00000557156 [bp] 539 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-005 [Transcript ID] ENST00000556140 [bp] 1454 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-006 [Transcript ID] ENST00000557417 [bp] 1063 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-013 [Transcript ID] ENST00000557199 [bp] 662 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-011 [Transcript ID] ENST00000555519 [bp] 588 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] STAT2-014 [Transcript ID] ENST00000555488 [bp] 536 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: STAT2-001 (ENST00000557235)


Input: [Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-008 (ENST00000470232)


Input: [Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-008 (ENST00000470232)


Input: [Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-008 (ENST00000470232)


Input: [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-008 (ENST00000470232)


Input: [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-008 (ENST00000470232)


Input: [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags]

Output: 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-008 (ENST00000470232)


Input: [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-008 (ENST00000470232)


Input: [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-008 (ENST00000470232)


Input: [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SYNGAP1-008 (ENST00000470232)


Input: [Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags]

Output: Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-008 (ENST00000508895)


Input: [Name] IL5RA-001 [Transcript ID] ENST00000446632 [bp] 2514 [Protein] 420aa [Translation ID] ENSP00000412209 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2559 [UniProt] A0A024R2C8 Q01344 [RefSeq] NM_175726 NP_783853 [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-007 [Transcript ID] ENST00000438560 [bp] 2252 [Protein] 378aa [Translation ID] ENSP00000390753 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58813 [UniProt] Q01344 [RefSeq] NM_001243099 NP_001230028 [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-004 [Transcript ID] ENST00000256452 [bp] 2001 [Protein] 420aa [Translation ID] ENSP00000256452 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2559 [UniProt] A0A024R2C8 Q01344 [RefSeq] NM_000564 NP_000555 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-002 [Transcript ID] ENST00000383846 [bp] 1828 [Protein] 335aa [Translation ID] ENSP00000373358 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2560 [UniProt] Q01344 [RefSeq] NM_175728 NP_783855 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-006 [Transcript ID] ENST00000430514 [bp] 1664 [Protein] 333aa [Translation ID] ENSP00000400400 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46739 [UniProt] Q01344 [RefSeq] NM_175724 NP_783851 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-003 [Transcript ID] ENST00000456302 [bp] 1389 [Protein] 333aa [Translation ID] ENSP00000392059 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46739 [UniProt] Q01344 [RefSeq] NM_175727 NP_783854 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-005 [Transcript ID] ENST00000311981 [bp] 1328 [Protein] 335aa [Translation ID] ENSP00000309196 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2560 [UniProt] Q01344 [RefSeq] NM_175725 NP_783852 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-201 [Transcript ID] ENST00000418488 [bp] 5521 [Protein] 325aa [Translation ID] ENSP00000388858 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7ERY4 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-008 [Transcript ID] ENST00000427088 [bp] 839 [Protein] 109aa [Translation ID] ENSP00000391274 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J3K8 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-009 [Transcript ID] ENST00000445701 [bp] 788 [Protein] 196aa [Translation ID] ENSP00000398117 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J6C4 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] IL5RA-010 [Transcript ID] ENST00000466722 [bp] 563 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IL5RA-003 (ENST00000456302)


Input: [Name] LTBR-001 [Transcript ID] ENST00000228918 [bp] 2260 [Protein] 435aa [Translation ID] ENSP00000228918 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8544 [UniProt] P36941 [RefSeq] NM_002342 NP_002333 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-003 [Transcript ID] ENST00000539925 [bp] 1665 [Protein] 416aa [Translation ID] ENSP00000440875 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59233 [UniProt] P36941 [RefSeq] NM_001270987 NP_001257916 [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-010 [Transcript ID] ENST00000541102 [bp] 1084 [Protein] 292aa [Translation ID] ENSP00000438605 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F5H2E7 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-014 [Transcript ID] ENST00000536876 [bp] 842 [Protein] 218aa [Translation ID] ENSP00000437647 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F5H6F8 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-012 [Transcript ID] ENST00000543190 [bp] 785 [Protein] 74aa [Translation ID] ENSP00000438955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F5H1S5 [RefSeq] - [Flags]

Output: Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-006 [Transcript ID] ENST00000544454 [bp] 632 [Protein] 148aa [Translation ID] ENSP00000437954 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F5H627 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-004 [Transcript ID] ENST00000546296 [bp] 783 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-005 [Transcript ID] ENST00000542830 [bp] 539 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-009 [Transcript ID] ENST00000441074 [bp] 2327 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-002 [Transcript ID] ENST00000444814 [bp] 1553 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-013 [Transcript ID] ENST00000535739 [bp] 928 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-011 [Transcript ID] ENST00000440421 [bp] 729 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-008 [Transcript ID] ENST00000541005 [bp] 583 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-015 [Transcript ID] ENST00000545445 [bp] 379 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] LTBR-007 [Transcript ID] ENST00000543542 [bp] 367 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LTBR-012 (ENST00000543190)


Input: [Name] Gtf2ird1-002 [Transcript ID] ENSMUST00000100652 [bp] 3693 [Protein] 1104aa [Translation ID] ENSMUSP00000098217 [CCDS] CCDS39307 [UniProt] Q9JI57 [RefSeq] NM_001081462 NP_001074931 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-013 [Transcript ID] ENSMUST00000073161 [bp] 3572 [Protein] 1072aa [Translation ID] ENSMUSP00000072904 [CCDS] CCDS39305 [UniProt] Q9JI57 [RefSeq] NM_020331 NP_065064 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-001 [Transcript ID] ENSMUST00000171794 [bp] 3524 [Protein] 1045aa [Translation ID] ENSMUSP00000129392 [CCDS] CCDS39304 [UniProt] Q6PD35 [RefSeq] NM_001081464 NP_001074933 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-006 [Transcript ID] ENSMUST00000100650 [bp] 3487 [Protein] 1077aa [Translation ID] ENSMUSP00000098215 [CCDS] CCDS39306 [UniProt] Q9JI57 [RefSeq] NM_001081463 NP_001074932 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-009 [Transcript ID] ENSMUST00000111244 [bp] 3461 [Protein] 1045aa [Translation ID] ENSMUSP00000106875 [CCDS] CCDS39304 [UniProt] Q6PD35 [RefSeq] NM_001081465 NP_001074934 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-012 [Transcript ID] ENSMUST00000074114 [bp] 3330 [Protein] 1001aa [Translation ID] ENSMUSP00000073752 [CCDS] CCDS51657 [UniProt] Q9JI57 [RefSeq] NM_001081467 NM_001244936 NP_001074936 NP_001231865 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-004 [Transcript ID] ENSMUST00000111245 [bp] 3299 [Protein] 1026aa [Translation ID] ENSMUSP00000106876 [CCDS] CCDS39302 [UniProt] Q9JI57 [RefSeq] NM_001081466 NP_001074935 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-007 [Transcript ID] ENSMUST00000100654 [bp] 3156 [Protein] 974aa [Translation ID] ENSMUSP00000098219 [CCDS] CCDS39303 [UniProt] Q9JI57 [RefSeq] NM_001081468 NP_001074937 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-005 [Transcript ID] ENSMUST00000202554 [bp] 3514 [Protein] 1058aa [Translation ID] ENSMUSP00000143809 [CCDS] - [UniProt] - [RefSeq] - [Flags] The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-201 [Transcript ID] ENSMUST00000167084 [bp] 3283 [Protein] 969aa [Translation ID] ENSMUSP00000132882 [CCDS] - [UniProt] Q9JI57 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-011 [Transcript ID] ENSMUST00000200944 [bp] 3133 [Protein] 969aa [Translation ID] ENSMUSP00000143848 [CCDS] - [UniProt] - [RefSeq] NM_001081469 NM_001081470 NP_001074938 NP_001074939 [Flags] The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-010 [Transcript ID] ENSMUST00000202280 [bp] 3052 [Protein] 942aa [Translation ID] ENSMUSP00000143897 [CCDS] - [UniProt] - [RefSeq] - [Flags] The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-014 [Transcript ID] ENSMUST00000202829 [bp] 1080 [Protein] 345aa [Translation ID] ENSMUSP00000144604 [CCDS] - [UniProt] Q80ZG9 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-021 [Transcript ID] ENSMUST00000201441 [bp] 786 [Protein] 262aa [Translation ID] ENSMUSP00000144447 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-017 [Transcript ID] ENSMUST00000201704 [bp] 751 [Protein] 251aa [Translation ID] ENSMUSP00000144373 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-029 [Transcript ID] ENSMUST00000202104 [bp] 676 [Protein] 167aa [Translation ID] ENSMUSP00000144203 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-022 [Transcript ID] ENSMUST00000201447 [bp] 579 [Protein] 193aa [Translation ID] ENSMUSP00000144222 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-025 [Transcript ID] ENSMUST00000202165 [bp] 579 [Protein] 193aa [Translation ID] ENSMUSP00000144420 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-016 [Transcript ID] ENSMUST00000201647 [bp] 361 [Protein] 99aa [Translation ID] ENSMUSP00000144391 [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-026 [Transcript ID] ENSMUST00000202321 [bp] 1439 [Protein] 47aa [Translation ID] ENSMUSP00000143948 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete [Biotype]

Output: Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-019 [Transcript ID] ENSMUST00000200798 [bp] 857 [Protein] 74aa [Translation ID] ENSMUSP00000144521 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete [Biotype]

Output: Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-024 [Transcript ID] ENSMUST00000201495 [bp] 801 [Protein] 38aa [Translation ID] ENSMUSP00000144003 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete [Biotype]

Output: Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-020 [Transcript ID] ENSMUST00000201526 [bp] 604 [Protein] 66aa [Translation ID] ENSMUSP00000144502 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete [Biotype]

Output: Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-015 [Transcript ID] ENSMUST00000202763 [bp] 608 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-008 [Transcript ID] ENSMUST00000202335 [bp] 3068 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-003 [Transcript ID] ENSMUST00000202414 [bp] 2506 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-018 [Transcript ID] ENSMUST00000202202 [bp] 810 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-027 [Transcript ID] ENSMUST00000200817 [bp] 802 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-023 [Transcript ID] ENSMUST00000202334 [bp] 741 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-028 [Transcript ID] ENSMUST00000202268 [bp] 630 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] Gtf2ird1-030 [Transcript ID] ENSMUST00000201608 [bp] 288 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Mus musculus - Summary - Transcript: Gtf2ird1-002 (ENSMUST00000100652)


Input: [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]

Output: 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)


Input: [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1

Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-013 (ENST00000441549)