Input: [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]

Output: 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-005 (ENST00000491073)


Input: [Name] ATP2C1-008 [Transcript ID] ENST00000510168 [bp] 5067 [Protein] 919aa [Translation ID] ENSP00000427461 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46914 [UniProt] P98194 [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-001 [Transcript ID] ENST00000508532 [bp] 4969 [Protein] 919aa [Translation ID] ENSP00000424783 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46914 [UniProt] P98194 [RefSeq] NM_001199179 NP_001186108 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-009 [Transcript ID] ENST00000505330 [bp] 4888 [Protein] 953aa [Translation ID] ENSP00000423774 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75006 [UniProt] B4E2Q0 [RefSeq] NM_001199181 NP_001186110 [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-011 [Transcript ID] ENST00000428331 [bp] 4795 [Protein] 919aa [Translation ID] ENSP00000395809 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46914 [UniProt] P98194 [RefSeq] NM_014382 NP_055197 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-004 [Transcript ID] ENST00000504948 [bp] 4714 [Protein] 903aa [Translation ID] ENSP00000423330 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56281 [UniProt] P98194 [RefSeq] NM_001199184 NP_001186113 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-201 [Transcript ID] ENST00000533801 [bp] 3690 [Protein] 888aa [Translation ID] ENSP00000432956 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46913 [UniProt] P98194 [RefSeq] NM_001001485 NP_001001485 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-010 [Transcript ID] ENST00000507488 [bp] 3579 [Protein] 973aa [Translation ID] ENSP00000421326 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56278 [UniProt] P98194 [RefSeq] NM_001199180 NP_001186109 [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-007 [Transcript ID] ENST00000504381 [bp] 3498 [Protein] 944aa [Translation ID] ENSP00000425320 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56279 [UniProt] P98194 [RefSeq] NM_001199182 NP_001186111 [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-002 [Transcript ID] ENST00000328560 [bp] 3484 [Protein] 888aa [Translation ID] ENSP00000329664 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46913 [UniProt] P98194 [RefSeq] NM_001199185 NP_001186114 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-003 [Transcript ID] ENST00000513801 [bp] 3439 [Protein] 923aa [Translation ID] ENSP00000422872 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56280 [UniProt] P98194 [RefSeq] NM_001199183 NP_001186112 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-005 [Transcript ID] ENST00000359644 [bp] 3401 [Protein] 949aa [Translation ID] ENSP00000352665 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS33856 [UniProt] P98194 [RefSeq] NM_001001486 NP_001001486 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-020 [Transcript ID] ENST00000422190 [bp] 3386 [Protein] 939aa [Translation ID] ENSP00000402677 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46912 [UniProt] P98194 [RefSeq] NM_001001487 NP_001001487 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-006 [Transcript ID] ENST00000504612 [bp] 3148 [Protein] 903aa [Translation ID] ENSP00000425228 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9V7 [RefSeq] - [Flags]

Output: 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-017 [Transcript ID] ENST00000508660 [bp] 943 [Protein] 314aa [Translation ID] ENSP00000424930 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9S7 [RefSeq] - [Flags]

Output: 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-019 [Transcript ID] ENST00000515854 [bp] 561 [Protein] 131aa [Translation ID] ENSP00000422890 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R9U9 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-014 [Transcript ID] ENST00000509662 [bp] 559 [Protein] 102aa [Translation ID] ENSP00000426849 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6REJ1 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-021 [Transcript ID] ENST00000505072 [bp] 556 [Protein] 120aa [Translation ID] ENSP00000427625 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RHV9 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-015 [Transcript ID] ENST00000508297 [bp] 540 [Protein] 82aa [Translation ID] ENSP00000421261 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RGE9 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-013 [Transcript ID] ENST00000504571 [bp] 786 [Protein] 215aa [Translation ID] ENSP00000422489 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0Y8X9 [RefSeq] - [Flags]

Output: 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-018 [Transcript ID] ENST00000507194 [bp] 651 [Protein] 50aa [Translation ID] ENSP00000427087 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YAH2 [RefSeq] - [Flags]

Output: 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-023 [Transcript ID] ENST00000509150 [bp] 573 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-012 [Transcript ID] ENST00000514654 [bp] 4730 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-016 [Transcript ID] ENST00000513636 [bp] 590 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] ATP2C1-022 [Transcript ID] ENST00000510774 [bp] 555 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP2C1-004 (ENST00000504948)


Input: [Name] PHF21A-002 [Transcript ID] ENST00000323180 [bp] 3675 [Protein] 634aa [Translation ID] ENSP00000323152 [CCDS] CCDS31474 [UniProt] Q96BD5 [RefSeq] NM_016621 NP_057705 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-004 [Transcript ID] ENST00000418153 [bp] 2730 [Protein] 680aa [Translation ID] ENSP00000398824 [CCDS] CCDS44578 [UniProt] Q96BD5 [RefSeq] NM_001101802 NP_001095272 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-010 [Transcript ID] ENST00000525438 [bp] 577 [Protein] 26aa [Translation ID] ENSP00000437110 [CCDS] - [UniProt] E9PNW9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-011 [Transcript ID] ENST00000529782 [bp] 561 [Protein] 63aa [Translation ID] ENSP00000435121 [CCDS] - [UniProt] E9PLV4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-007 [Transcript ID] ENST00000529734 [bp] 557 [Protein] 101aa [Translation ID] ENSP00000436157 [CCDS] - [UniProt] E9PQM3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-021 [Transcript ID] ENST00000524497 [bp] 555 [Protein] 134aa [Translation ID] ENSP00000431273 [CCDS] - [UniProt] E9PLU5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-016 [Transcript ID] ENST00000525676 [bp] 550 [Protein] 93aa [Translation ID] ENSP00000431964 [CCDS] - [UniProt] H0YCM5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-019 [Transcript ID] ENST00000532010 [bp] 546 [Protein] 9aa [Translation ID] ENSP00000435645 [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-020 [Transcript ID] ENST00000531959 [bp] 507 [Protein] 134aa [Translation ID] ENSP00000432916 [CCDS] - [UniProt] A0A0A6YYQ2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-008 [Transcript ID] ENST00000527782 [bp] 490 [Protein] 11aa [Translation ID] ENSP00000434687 [CCDS] - [UniProt] E9PNN4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-009 [Transcript ID] ENST00000533757 [bp] 466 [Protein] 51aa [Translation ID] ENSP00000432406 [CCDS] - [UniProt] E9PR02 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-018 [Transcript ID] ENST00000532028 [bp] 451 [Protein] 150aa [Translation ID] ENSP00000431621 [CCDS] - [UniProt] H0YCI1 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-017 [Transcript ID] ENST00000530587 [bp] 1293 [Protein] 116aa [Translation ID] ENSP00000435984 [CCDS] - [UniProt] H0YEK2 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-013 [Transcript ID] ENST00000532883 [bp] 1051 [Protein] 82aa [Translation ID] ENSP00000432094 [CCDS] - [UniProt] E9PS51 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-015 [Transcript ID] ENST00000527753 [bp] 592 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-014 [Transcript ID] ENST00000525679 [bp] 565 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-012 [Transcript ID] ENST00000528893 [bp] 457 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-006 [Transcript ID] ENST00000530312 [bp] 276 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-003 [Transcript ID] ENST00000527401 [bp] 8954 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-022 [Transcript ID] ENST00000534766 [bp] 635 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Name] PHF21A-023 [Transcript ID] ENST00000534724 [bp] 390 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PHF21A-010 (ENST00000525438)


Input: [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]

Output: CPT1B-001

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]

Output: CPT1B-005

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]

Output: CPT1B-004

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]

Output: CPT1B-201

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]

Output: CPT1B-202

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Name]

Output: CPT1B-008

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000423069 [bp] 719 [Protein] 92aa [Translation ID] ENSP00000396408 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H7C0S1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]

Output: CPT1B-020

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000497224 [bp] 806 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]

Output: CPT1B-014

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000460853 [bp] 757 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]

Output: CPT1B-007

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000475238 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]

Output: CPT1B-013

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000476790 [bp] 563 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]

Output: CPT1B-010

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000461117 [bp] 562 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]

Output: CPT1B-009

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Transcript ID] ENST00000479886 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]

Output: CPT1B-011

Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-011 (ENST00000479886)


Input: [Name] TNNT3-004 [Transcript ID] ENST00000381558 [bp] 1246 [Protein] 250aa [Translation ID] ENSP00000370970 [CCDS] CCDS41596 [UniProt] P45378 [RefSeq] NM_001042782 NM_001297646 NP_001036247 NP_001284575 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-001 [Transcript ID] ENST00000278317 [bp] 1210 [Protein] 258aa [Translation ID] ENSP00000278317 [CCDS] CCDS7727 [UniProt] P45378 [RefSeq] NM_006757 NP_006748 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-002 [Transcript ID] ENST00000381589 [bp] 1060 [Protein] 256aa [Translation ID] ENSP00000371001 [CCDS] CCDS41594 [UniProt] P45378 [RefSeq] NM_001042781 NP_001036246 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-003 [Transcript ID] ENST00000381579 [bp] 1042 [Protein] 250aa [Translation ID] ENSP00000370991 [CCDS] CCDS41595 [UniProt] P45378 [RefSeq] NM_001042780 NP_001036245 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-006 [Transcript ID] ENST00000381557 [bp] 1019 [Protein] 244aa [Translation ID] ENSP00000370969 [CCDS] - [UniProt] F8WA37 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-012 [Transcript ID] ENST00000381563 [bp] 844 [Protein] 261aa [Translation ID] ENSP00000370975 [CCDS] - [UniProt] P45378 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-010 [Transcript ID] ENST00000397301 [bp] 818 [Protein] 269aa [Translation ID] ENSP00000380468 [CCDS] - [UniProt] P45378 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-011 [Transcript ID] ENST00000344578 [bp] 794 [Protein] 245aa [Translation ID] ENSP00000344870 [CCDS] - [UniProt] P45378 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-014 [Transcript ID] ENST00000397304 [bp] 720 [Protein] 239aa [Translation ID] ENSP00000380471 [CCDS] - [UniProt] H9KVA2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-015 [Transcript ID] ENST00000446240 [bp] 720 [Protein] 239aa [Translation ID] ENSP00000413203 [CCDS] - [UniProt] C9JZN9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-007 [Transcript ID] ENST00000453458 [bp] 699 [Protein] 208aa [Translation ID] ENSP00000415614 [CCDS] - [UniProt] C9JCA5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-008 [Transcript ID] ENST00000493234 [bp] 1113 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-009 [Transcript ID] ENST00000492075 [bp] 807 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] TNNT3-016 [Transcript ID] ENST00000473100 [bp] 334 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: TNNT3 (ENSG00000130595)


Input: [Name] STUB1-002 [Transcript ID] ENST00000565677 [bp] 1560 [Protein] 231aa [Translation ID] ENSP00000457228 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS76797 [UniProt] Q9UNE7 [RefSeq] NM_001293197 NP_001280126 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-001 [Transcript ID] ENST00000219548 [bp] 1472 [Protein] 303aa [Translation ID] ENSP00000219548 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10419 [UniProt] Q9UNE7 [RefSeq] NM_005861 NP_005852 [Flags]

Output: Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-008 [Transcript ID] ENST00000564370 [bp] 875 [Protein] 231aa [Translation ID] ENSP00000456875 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS76797 [UniProt] Q9UNE7 [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-004 [Transcript ID] ENST00000567173 [bp] 743 [Protein] 214aa [Translation ID] ENSP00000456591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BS86 [RefSeq] - [Flags]

Output: 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-011 [Transcript ID] ENST00000564316 [bp] 729 [Protein] 157aa [Translation ID] ENSP00000457090 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BTA3 [RefSeq] - [Flags]

Output: 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-010 [Transcript ID] ENST00000566408 [bp] 684 [Protein] 185aa [Translation ID] ENSP00000457583 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BUD0 [RefSeq] - [Flags]

Output: 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-012 [Transcript ID] ENST00000565813 [bp] 337 [Protein] 24aa [Translation ID] ENSP00000476751 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] V9GYH3 [RefSeq] - [Flags]

Output: 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-005 [Transcript ID] ENST00000566181 [bp] 510 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-003 [Transcript ID] ENST00000569248 [bp] 1853 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-007 [Transcript ID] ENST00000563505 [bp] 894 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] STUB1-006 [Transcript ID] ENST00000567790 [bp] 428 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]

Output: Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3

Ensembl genome browser 81: Homo sapiens - Summary - Gene: STUB1 (ENSG00000103266)


Input: [Name] MS4A3-001 [Transcript ID] ENST00000278865 [bp] 1613 [Protein] 214aa [Translation ID] ENSP00000278865 [CCDS] CCDS31567 [UniProt] Q96HJ5 [RefSeq] NM_006138 NP_006129 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Summary - Gene: MS4A3 (ENSG00000149516)


Input: [Name] MS4A3-201 [Transcript ID] ENST00000358152 [bp] 1516 [Protein] 168aa [Translation ID] ENSP00000350872 [CCDS] CCDS31568 [UniProt] Q96HJ5 [RefSeq] NM_001031809 NP_001026979 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Summary - Gene: MS4A3 (ENSG00000149516)


Input: [Name] MS4A3-003 [Transcript ID] ENST00000395032 [bp] 867 [Protein] 91aa [Translation ID] ENSP00000378473 [CCDS] CCDS41651 [UniProt] Q96HJ5 [RefSeq] NM_001031666 NP_001026836 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Summary - Gene: MS4A3 (ENSG00000149516)


Input: [Name] MS4A3-002 [Transcript ID] ENST00000534744 [bp] 507 [Protein] 168aa [Translation ID] ENSP00000434117 [CCDS] CCDS31568 [UniProt] Q96HJ5 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Genes and/or transcript that contains an open reading frame (ORF).Protein coding

Ensembl genome browser 81: Homo sapiens - Summary - Gene: MS4A3 (ENSG00000149516)


Input: [Name] MS4A3-005 [Transcript ID] ENST00000525686 [bp] 746 [Protein] 83aa [Translation ID] ENSP00000434109 [CCDS] - [UniProt] E9PRW8 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]

Output: Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay

Ensembl genome browser 81: Homo sapiens - Summary - Gene: MS4A3 (ENSG00000149516)


Input: [Name] MS4A3-008 [Transcript ID] ENST00000526199 [bp] 394 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript

Ensembl genome browser 81: Homo sapiens - Summary - Gene: MS4A3 (ENSG00000149516)


Input: [Name] MS4A3-006 [Transcript ID] ENST00000528952 [bp] 923 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Gene: MS4A3 (ENSG00000149516)


Input: [Name] MS4A3-004 [Transcript ID] ENST00000528298 [bp] 486 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]

Output: Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron

Ensembl genome browser 81: Homo sapiens - Summary - Gene: MS4A3 (ENSG00000149516)


Input: [Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]

Output: Q99497 V9HWC2

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)


Input: [Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]

Output: Q99497 V9HWC2

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)


Input: [Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]

Output: Q99497 V9HWC2

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)


Input: [Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]

Output: Q99497 V9HWC2

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)


Input: [Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]

Output: K7ELW0

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)


Input: [Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]

Output: K7EN27

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)


Input: [Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt]

Output: Q99497 V9HWC2

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)


Input: [Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)


Input: [Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt]

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)


Input: [Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]

Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PARK7-005 (ENST00000377491)