In 1994 he published Jewish History, Jewish Religion: The Weight of Three Thousand Years, in 1997 he published Open Secrets: Israel’s Nuclear and Foreign Policies, and in 1999 he published Jewish Fundamentalism In Israel, co-authored with Norton Mezvinsky. In the introduction to the last book, Mezvinsky and Shahak explained that, ‘We realize that by criticizing Jewish fundamentalism we are criticizing a part of the past that we love. We wish that members of every human grouping would criticize their own past, even before criticizing others’.