I have the set of miRNA (around 20) found alternatively expressed in my set of experiments. Now could find the predicted target genes list for each of that miRNA. The list is so big.....in thousands. I want to know the most affected pathways or networks with this set of miRNA in rat genome. I tried using tools such as Targetscan, mirbase, miRANDA etc but I am unable to get.
How many gene transcripts are there in Rat genome (latest assembly)?
How to select the relative KEGG pathways?
Where to find a list of rat protein coding genes?
Is Miat Gene Present In Rat?
How can I find the critical genes for the pathway targeted by my miRNAs?