Get unprecedented access to array content.
The NetAffx Analysis Center enables researchers to correlate their GeneChip® array results with array design and annotation information.
Note that you can continue to use your affymetrix.com login information for access to the NetAffx website.
UCSC Query - Query the UCSC Browser including a custom track for your array of interest.
NA36 annotation support is now available for the entire expression array catalog in the NetAffx Analysis Center.
Click here for full documentation on sources used in NA36.
The new Clariom® expression array annotations are available for search in the NetAffx Analysis Center. Included in this release are NA36 annotations for HTA-2_0, MTA-1_0, RTA-1_0, MedTA-1_0. These new arrays are also available on the Expression Array Comparison Tool.
NA36 annotations for the rest of the Expression catalog to follow.
Release of NetAffx NA35 !
The bioinformatics pipelines for assigning annotations for the NetAffx Gene and Exon Expression products have been overhauled in order to provide higher quality annotations. The result has been even more reliable coverage for the probe sets, eliminating false positive results.
This release also incorporates updated biological annotations for transcripts, gene symbols, OMIM, Gene Ontology and over a score of other data sources. For the genotyping products, this release incorporates chrMT (build NC_012920), dbSNP142, and allele frequencies from the 1000 Genomes Project.
Stay tuned for annotation updates to the model organisms expression arrays, and an update to the Expression Array Comparison Tool!
Click here for full documentation on sources used in NA35.
The NetAffx DAS server will be closing down as a service on July 1, 2014 as we focus on a new generation of support tools in the NetAffx group. To access a current set of DAS servers, download a current version of Integrated Genome Browser from Bioviz.org.
NetAffx Expression Array Comparison Tool, now available!
Explore and search the entire Affymetrix GeneChip Expression array catalog! Simply input gene symbols, pathways, Gene Ontology (GO), or Medical Subject Heading (MeSH) terms. In an instant, this tool returns tailored coverage statistics and an interactive visual interface where you can compare and contrast array content.
Sources for NetAffx Annotation Updates See documentation for sources and versions of data that went into the annotation updates.
Using the NetAffx XML feed Use simple scripts to track changes in annotations or library files with the NetAffx XML Feed.
Sleuthing with NetAffx Tips and examples on how to unravel difficultprobe sets and SNPs.