Commit
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c5ef047
1
Parent(s):
1fda619
Update nucleotide_transformer_downstream_tasks.py
Browse files
nucleotide_transformer_downstream_tasks.py
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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"""Script for the dataset containing
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Transformer paper.
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from typing import List
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import datasets
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# You can copy an official description
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_DESCRIPTION = """\
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18 classification downstream tasks from the Nucleotide Transformer paper. Each task
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corresponds to a dataset configuration.
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"""
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@@ -42,23 +42,7 @@ _HOMEPAGE = "https://github.com/instadeepai/nucleotide-transformer"
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_LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
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_TASKS = [
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'H4ac',
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'H3K36me3',
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'splice_sites_donors',
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'splice_sites_acceptors',
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'H3',
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'H4',
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'H3K4me3',
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'splice_sites_all',
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'H3K4me1',
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'H3K14ac',
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'enhancers_types',
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'promoter_no_tata',
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'H3K79me3',
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'H3K4me2',
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'promoter_tata',
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'enhancers',
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'H3K9ac',
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'promoter_all'
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]
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@@ -81,10 +65,6 @@ class NucleotideTransformerDownstreamTasksConfig(datasets.BuilderConfig):
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class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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"""Genomes from 850 species, filtered and split into chunks of consecutive
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nucleotides. 50 genomes are taken for test, 50 for validation and 800
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for training."""
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VERSION = datasets.Version("1.1.0")
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BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
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BUILDER_CONFIGS = [
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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"""Script for the dataset containing the "promoter_all" and "enhancers" downstream tasks from the Nucleotide
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Transformer paper."""
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from typing import List
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import datasets
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# You can copy an official description
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_DESCRIPTION = """\
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2 of the 18 classification downstream tasks from the Nucleotide Transformer paper. Each task
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corresponds to a dataset configuration.
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"""
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_LICENSE = "https://github.com/instadeepai/nucleotide-transformer/LICENSE.md"
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_TASKS = [
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'enhancers',
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'promoter_all'
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]
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class NucleotideTransformerDownstreamTasks(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.1.0")
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BUILDER_CONFIG_CLASS = NucleotideTransformerDownstreamTasksConfig
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BUILDER_CONFIGS = [
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