summary_tsne_centralities {CINNA} R Documentation

Summarize t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures

Description

This function summarize tsne analysis results on centrality measures

Usage

summary_tsne_centralities(x, dims = 2, perplexity = 5, scale = TRUE)

Arguments

 x a list containg the computed cetrality values dims integer; number of the outpu dimensions(default=2) perplexity numeric; A flexible measure of the efficient number of neighbors. The performance of SNE is fairly robust to changes in the perplexity, and typical values are between 5 and 50.(default=5) scale Whether the centrality values should be scaled or not(default=TRUE)

Value

It resturns a list containing below values:

Y Matrix containing the new representations for the objects

costs The cost for every object after the final iteration

Author(s)

Minoo Ashtiani, Mehdi Mirzaie, Mohieddin Jafari
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