The main deities represented in the temple include Shiva as Ramanathaswamy (the deity of the Rameswaram Temple) and Vishnu as Ananthapadmanabha (the deity of the Padmanabhaswamy Temple). Along with them, there are shrines for Parvathi, Lakshmi, Saraswathi, Durga, Rama, Krishna, Ganapathi, Subrahmanya, Andal, Hanuman and Navagrahas. Ayyappa has a separate shrine in the model of the famous Sabarimala temple, with 18 steps.