The lava flows, cinder cones, and other volcanic features of El Malpais are part of the Zuni-Bandera volcanic field, the second largest volcanic field in the Basin and Range Province. This volcanically active area on the southeast margin of the Colorado Plateau is at the intersection of the Rio Grande Rift Basin, with its deep normal faulting, and the ancient Jemez Lineament. These two features provide the crustal weaknesses that recent magmatic intrusions and Cenozoic volcanism are attributed to.