BUG: groupby(..., dropna=False) excludes NA values when grouping on MultiIndex levels
- [x] I have checked that this issue has not already been reported.

- [x] I have confirmed this bug exists on the latest version of pandas.

- [x] (optional) I have confirmed this bug exists on the master branch of pandas.

---

#### Code Sample

```python
In  [3]: mi = pd.MultiIndex.from_tuples([('a',np.nan), ('b', 2)], names=['ltr','num'])

In  [4]: df = pd.DataFrame({'foo': range(mi.size)}, index=mi)
In  [5]: df
Out [5]:
		foo
ltr	num	
a	NaN	0
b	2	1

# grouping on multindex levels
In  [6]: df.groupby(df.index.names, dropna=False).sum()
Out [6]:
		foo
ltr	num	
b	2	1

# grouping on same information as columns
In  [7]: df.reset_index().groupby(df.index.names, dropna=False).sum()
Out [7]:
		foo
ltr	num	
a	NaN	0
b	2.0	1

# grouping on multiindex levels for pd.Series
In  [8]: df['foo'].groupby(s.index.names, dropna=False).sum()
Out [8]:
ltr  num
b    2      1
Name: foo, dtype: int64
```

#### Problem description

The desired behavior of dropna=False, namely including NA values in the groups, does not work when grouping on MultiIndex levels, but does work when grouping on DataFrame columns.

#### Expected Output
```python
		foo
ltr	num	
a	NaN	0
b	2.0	1
```

#### Output of ``pd.show_versions()``

<details>

INSTALLED VERSIONS
------------------
commit           : 2a7d3326dee660824a8433ffd01065f8ac37f7d6
python           : 3.6.7.final.0
python-bits      : 64
OS               : Linux
OS-release       : 4.14.193-149.317.amzn2.x86_64
Version          : #1 SMP Thu Sep 3 19:04:44 UTC 2020
machine          : x86_64
processor        : x86_64
byteorder        : little
LC_ALL           : en_US.UTF-8
LANG             : en_US.UTF-8
LOCALE           : en_US.UTF-8

pandas           : 1.1.2
numpy            : 1.19.0
pytz             : 2020.1
dateutil         : 2.7.4
pip              : 20.1.1
setuptools       : 40.4.3
Cython           : None
pytest           : 5.4.3
hypothesis       : None
sphinx           : 3.1.2
blosc            : None
feather          : None
xlsxwriter       : None
lxml.etree       : None
html5lib         : None
pymysql          : None
psycopg2         : None
jinja2           : 2.10
IPython          : 7.0.1
pandas_datareader: None
bs4              : None
bottleneck       : None
fsspec           : None
fastparquet      : None
gcsfs            : None
matplotlib       : 3.3.0
numexpr          : None
odfpy            : None
openpyxl         : None
pandas_gbq       : None
pyarrow          : None
pytables         : None
pyxlsb           : None
s3fs             : None
scipy            : None
sqlalchemy       : 1.2.12
tables           : None
tabulate         : None
xarray           : None
xlrd             : None
xlwt             : None
numba            : None

</details>
