BUG: get_indexer_non_unique does not handle np.datetime64("NaT") and np.timedelta64("NaT")
### 

- [X] I have checked that this issue has not already been reported.

- [X] I have confirmed this bug exists on the [latest version](https://pandas.pydata.org/docs/whatsnew/index.html) of pandas.

- [X] I have confirmed this bug exists on the master branch of pandas.


### Reproducible Example

```python
import numpy as np
from pandas import Index
import pandas._testing as tm


index = Index(
    np.array(
        [
            "2021-10-02",
            np.datetime64("NaT"),
            np.timedelta64("NaT"),
            np.datetime64("NaT"),
        ],
        dtype=object,
    )
)
# pass as index to prevent target from being casted to DatetimeIndex
indexer, missing = index.get_indexer_non_unique(
    Index([np.datetime64("NaT")], dtype=object)
)

expected_indexer = np.array([1, 3], dtype=np.intp)
tm.assert_numpy_array_equal(indexer, expected_indexer)
```


### Issue Description

`Index.get_indexer_non_unique()` does not handle when multiple `np.datetime64("NaT")` or `np.timedelta64("NaT")` are present. Extension of #35498

### Expected Behavior

See Reproducible Example

### Installed Versions

<details>

INSTALLED VERSIONS
------------------
commit           : 24ccae703185e6961af65d76494906840ea19dcb
python           : 3.8.10.final.0
python-bits      : 64
OS               : Darwin
OS-release       : 20.6.0
Version          : Darwin Kernel Version 20.6.0: Mon Aug 30 06:12:21 PDT 2021; root:xnu-7195.141.6~3/RELEASE_X86_64
machine          : x86_64
processor        : i386
byteorder        : little
LC_ALL           : None
LANG             : en_US.UTF-8
LOCALE           : en_US.UTF-8

pandas           : 1.2.0.dev0+4209.g24ccae7031
numpy            : 1.20.3
pytz             : 2021.1
dateutil         : 2.8.1
pip              : 21.1.2
setuptools       : 49.6.0.post20210108
Cython           : 0.29.23
pytest           : 6.2.4
hypothesis       : 6.13.14
sphinx           : 3.5.4
blosc            : None
feather          : None
xlsxwriter       : 1.4.3
lxml.etree       : 4.6.3
html5lib         : 1.1
pymysql          : None
psycopg2         : None
jinja2           : 2.11.3
IPython          : 7.24.1
pandas_datareader: None
bs4              : 4.9.3
bottleneck       : 1.3.2
fsspec           : 2021.05.0
fastparquet      : 0.6.3
gcsfs            : 2021.05.0
matplotlib       : 3.4.2
numexpr          : 2.7.3
odfpy            : None
openpyxl         : 3.0.7
pandas_gbq       : None
pyarrow          : 4.0.0
pyxlsb           : None
s3fs             : 2021.05.0
scipy            : 1.6.3
sqlalchemy       : 1.4.17
tables           : 3.6.1
tabulate         : 0.8.9
xarray           : 0.18.2
xlrd             : 2.0.1
xlwt             : 1.3.0
numba            : 0.53.1

</details>
