DEPR: ignoring missing labels when indexing on MultiIndex level
- [ ] closes #xxxx
- [ ] tests added / passed
- [x] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
- [ ] whatsnew entry

There are a bunch of issues that boil down to this weird behavior.  I need to track down the full list (@attack68 do you have such a list handy?)