BUG:MultiIndex.from_arrays gives wrong lable on level=NaN
When I tried to generate multiindex with `np.nan` or `None` from array, I got:

```python
import pandas as pd
import numpy as np
from pandas import MultiIndex as MultiIndex
from pandas import Index as Index
m = MultiIndex.from_arrays([[np.nan, np.nan, 'one', 'one', 'two', 'two', 'All'],
                         ['dull', 'shiny', 'dull', 'shiny', 'dull', 'shiny', '']],
                         names=['b', 'c'])
print m

[Output]
MultiIndex(levels=[[u'All', u'one', u'two'], [u'', u'dull', u'shiny']],
           labels=[[-1, -1, 1, 1, 2, 2, 0], [1, 2, 1, 2, 1, 2, 0]],
           names=[u'b', u'c'])
```
While it should be (and can be achieved from MultiIndex constructor):
```python
m = MultiIndex(levels=[Index(['All', np.nan, 'one', 'two']),
             Index(['', 'dull', 'shiny'])],
             labels=[[1, 1, 2, 2, 3, 3, 0],
             [1, 2, 1, 2, 1, 2, 0]], names=['b', 'c'])
print m
[Output]
MultiIndex(levels=[[u'All', nan, u'one', u'two'], [u'', u'dull', u'shiny']],
           labels=[[1, 1, 2, 2, 3, 3, 0], [1, 2, 1, 2, 1, 2, 0]],
           names=[u'b', u'c'])

```

The problems seems to be [here](https://github.com/pandas-dev/pandas/blob/master/pandas/indexes/multi.py#L936)

#### Output of ``pd.show_versions()``

<details>
INSTALLED VERSIONS
------------------
commit: 74e20a0c4146919a82312c1027dcb57b48b613e3
python: 2.7.13.final.0
python-bits: 64
OS: Darwin
OS-release: 14.5.0
machine: x86_64
processor: i386
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: None.None

pandas: 0.19.0+300.g74e20a0c4
nose: 1.3.3
pip: 9.0.1
setuptools: 32.1.0
Cython: 0.25.2
numpy: 1.11.3
scipy: 0.14.0
statsmodels: 0.5.0
xarray: 0.7.2
IPython: 5.1.0
sphinx: 1.4.1
patsy: 0.2.1
dateutil: 2.6.0
pytz: 2016.10
blosc: None
bottleneck: None
tables: None
numexpr: None
feather: None
matplotlib: 1.5.3
openpyxl: 2.3.5
xlrd: 0.9.4
xlwt: 1.0.0
xlsxwriter: 0.8.4
lxml: None
bs4: None
html5lib: None
httplib2: 0.9.2
apiclient: None
sqlalchemy: None
pymysql: None
psycopg2: None
jinja2: 2.8
s3fs: None
pandas_datareader: None

</details>
