Update cpython imports in Cython Code
Looking at the Cython source there is a big deprecation warning about doing `from cpython cimport ...`

https://github.com/cython/cython/blob/cd031618700bf8293818729ee07bfc855fb424a2/Cython/Includes/cpython/__init__.pxd#L125

We tend to import things that way, so I think would be nice to clean up our imports to be absolute from cpython. 

I think this is a great issue to pick up for those looking to get more familiar with Cython, so labeling as good first issue

@jbrockmendel 