na_position doesn't work for sort_index() with MultiIndex
#### Code Sample, a copy-pastable example if possible

```python
In [1]: import numpy as np

In [2]: import pandas as pd

In [3]: pd.__version__
Out[3]: u'0.19.0'

In [4]: mi = pd.MultiIndex.from_tuples([[1, 1, 3], [1, 1, np.nan]], names=list('ABC'))

In [5]: df = pd.DataFrame([[1, 2], [3, 4]], mi)

In [6]: df.sort_index(na_position="first")
Out[6]: 
         0  1
A B C        
1 1 NaN  3  4
    3    1  2

In [7]: df.sort_index(na_position="last")
Out[7]: 
         0  1
A B C        
1 1 NaN  3  4
    3    1  2
```

#### Problem description

The `na_position` argument isn't used in `DataFrame.sort_index()` or `Series.sort_index()` due to the way we sort the `MultiIndex`.  Whenever we create a `MultiIndex`, we store the labels as relative values.  For instance, if we have the following `MultiIndex`:  
```python
MultiIndex.from_tuples([[1, 1, 3], [1, 1, np.nan]], names=list('ABC'))
```
the values get stored as 
```python
MultiIndex(levels=[[1], [1], [3]],
           labels=[[0, 0], [0, 0], [0, -1]],
           names=[u'A', u'B', u'C'])
```
with a `NaN` placeholder of -1.

These label values are what get passed to the sorting algorithm for both [DataFrames](https://github.com/pandas-dev/pandas/blob/master/pandas/core/frame.py#L3334-L3337) and [Series](https://github.com/pandas-dev/pandas/blob/master/pandas/core/series.py#L1782).  Since the sorting only happens on the `labels`, it has no notion of the `NaN`.

This has been discussed in #14015 and #14672 .

My original naive solution was to change [these lines](https://github.com/pandas-dev/pandas/blob/master/pandas/core/frame.py#L3337-L3338) from:

```python
indexer = _lexsort_indexer(labels.labels, orders=ascending,
                                            na_position=na_position)
```

to

```python
index_values_list = np.dstack(labels.get_values())[0].tolist()
indexer = _lexsort_indexer(index_values_list, orders=ascending,
                                           na_position=na_position)
```

This didn't break any tests, but it isn't necessarily the best approach.  

#### Expected Output

```python
In [7]: df.sort_index(na_position="last")
Out[7]: 
         0  1
A B C        
1 1 3    1  2
    NaN  3  4

```

#### Output of ``pd.show_versions()``

<details>
In [3]: pd.show_versions()

INSTALLED VERSIONS
------------------
commit: None
python: 2.7.12.final.0
python-bits: 64
OS: Linux
OS-release: 3.16.0-77-generic
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: None.None

pandas: 0.19.0
nose: 1.3.4
pip: 9.0.0
setuptools: 27.2.0
Cython: 0.21
numpy: 1.11.2
scipy: 0.16.1
statsmodels: 0.6.1
xarray: None
IPython: 4.0.0
sphinx: 1.2.3
patsy: 0.3.0
dateutil: 2.5.3
pytz: 2016.7
blosc: None
bottleneck: None
tables: 3.1.1
numexpr: 2.3.1
matplotlib: 1.5.0
openpyxl: 1.8.5
xlrd: 0.9.3
xlwt: 0.7.5
xlsxwriter: 0.5.7
lxml: 3.4.0
bs4: 4.3.2
html5lib: None
httplib2: 0.9.2
apiclient: 1.5.5
sqlalchemy: 0.9.7
pymysql: None
psycopg2: 2.6.1 (dt dec pq3 ext lo64)
jinja2: 2.7.3
boto: 2.32.1
pandas_datareader: None

</details>
