 He made five appearances in the Coppa Italia, with his only goal coming against local rivals A.C. Milan in the second leg of the quarter-finals, as he helped Inter reach the final, only to be defeated by Lazio.Despite his limited playing time, Baggio still managed several important goals to help Inter to a fourth-place finish, alongside Parma, such as his match winning goal against Hellas Verona, which he scored after coming off the bench, after being excluded from the team since 18 December 1999.Baggio had also previously helped to set up Inter's equaliser during the match.