 An appendectomy in June derailed his comeback attempt, shelving him until the end of July, and he spent the rest of the season rehabbing in the minor leagues.The Florida Marlins signed him on November 10, 2005.Carlyle began with the Triple-A Albuquerque Isotopes, going 1-3 with a 1.93 ERA and 22 strikeouts in 13 games.