 Promoted to Major, Morgan flew a second combat tour in the Pacific Theater, commanding the 869th Bomb Squadron, 497th Bomb Group.Flying B-29 Superfortress, "42-24592", tail code 'A1' named "Dauntless Dotty", after his third wife, Dorothy Johnson Morgan, he completed 26 missions over Japan until sent home on 24 April 1945.On 24 November 1944, he led the first mission of the XXI Bomber Command to bomb Japan, 111 aircraft of the 73rd Bomb Wing to Tokyo, with wing commander Brigadier General Emmett O'Donnell, Jr. as mission command pilot and Vince Evans as lead bombardier.