gapped k-mer SVM model has been used to infer the kmers that are enriched within cis-regulatory sequences with high activity compared to sequences with lower activity. These models provide high predictive power. Deep learning and random forest approaches have also been used to interpret the results of these high-dimensional experiments. These models are beginning to help develop a better understanding of non-coding DNA function towards gene-regulation. Consortium projects focused on Functional Genomics The ENCODE project The ENCODE (Encyclopedia of DNA elements) project is an in-depth analysis of the human genome whose goal is to identify all the functional elements of genomic DNA, in both coding and non-coding regions. Important results include evidence from genomic tiling arrays that most nucleotides are transcribed as coding transcripts, non-coding RNAs, or random transcripts, the discovery of additional transcriptional regulatory sites, further elucidation of chromatin-modifying mechanisms. The Genotype-Tissue Expression (GTEx) project The GTEx project is a human genetics project aimed at understanding the role of genetic variation in shaping variation in the transcriptome across tissues. The project has collected a variety of tissue samples (> 50 different tissues) from more than 700 post-mortem donors. This has resulted in the collection of >11,000 samples. GTEx has helped understand the tissue-sharing and tissue-specificity of eQTLs. The genomic resource was developed to "enrich our understanding of how differences in our DNA sequence contribute to health and disease." See also Systems biology Structural genomics Comparative genomics Pharmacogenomics MGED Society Epigenetics Bioinformatics Epistasis and functional genomics Synthetic viability Protein function prediction References External links European Science Foundation Programme on Frontiers of Functional Genomics MUGEN NoE — Integrated Functional Genomics in Mutant Mouse Models Nature insights: functional genomics ENCODE Molecular biology Genomics