to San Francisco, though Pardee was unaware that federal troops of the U.S. Army, under the command Brigadier General Frederick Funston, were already patrolling the streets. Pardee sought to take command of the situation himself, traveling to his native Oakland in the later afternoon to oversee the state response to the disaster. Making his headquarters in Oakland Mayor Frank K. Mott's office, Pardee worked twenty-hour days during the disaster, signing travel permission papers, coordinating state and federal relief funds and trains, and remaining in contact with the outside world through Oakland's undamaged telegraph lines. In addition, Pardee also visited other afflicted cities, such as San Jose and Santa Rosa, to tour and coordinate their own disaster responses. Downfall Despite having been heavily praised by the public for his handling of the state bureaucracy during the 1906 disaster, Pardee continued to have a strained relationship with the Southern Pacific Railroad, one that had been ongoing since the 1890s while he was Mayor of Oakland. Pardee's role in the burgeoning Progressive movement which distrusted large corporate monopolies, as well as his efforts to conserve and protect state forests, remained a constant thorn for Southern Pacific executives. A lengthy bitter battle over the Port of Oakland, which Pardee argued on behalf of Oakland that the port was a municipal rather than private corporation, dragged out for much of his governorship. The case was decided upon by the California Supreme Court in 1906, ruling in Oakland's favor. Pardee also encouraged creation of new railroad companies to break the Southern Pacific's monopolies. At the state Republican convention in Santa Cruz to nominate the party's candidate for the governorship in the 1906 general elections, Railroad Republicans led by party machine boss Abe Ruef, sought to strip Pardee of the nomination. Southern Pacific interests within the Republicans believed Pardee as too independent and troublesome. Writing in the San Francisco Chronicle on September 1, 1906, Pardee commented that "[I]t is evident that the Railroad machine and [Abe] Ruef did not want me to be governor again, and as they were in control of the convention, what kick have I coming?" Railroad Republicans, now dominating the Santa Cruz convention due to intense lobbying by Ruef, denied Pardee the nomination. Instead, Republicans and Southern Pacific supporters nominated U.S. House Representative James Gillett, a pro-railroad supporter. Pardee's loss of the nomination sparked anger amongst many Progressive Republican circles, fueling desires for