the northern tuatara was re-classified as Sphenodon punctatus punctatus and the Brothers Island tuatara as Sphenodon punctatus guntheri. Individuals from Brothers Island could also not be distinguished from other modern and fossil samples based on jaw morphology. The Brothers Island tuatara has olive brown skin with yellowish patches, while the colour of the northern tuatara ranges from olive green through grey to dark pink or brick red, often mottled, and always with white spots. In addition, the Brothers Island tuatara is considerably smaller. An extinct species of Sphenodon was identified in November 1885 by William Colenso, who was sent an incomplete subfossil specimen from a local coal mine. Colenso named the new species S. diversum. Genomic characteristics Long interspersed nuclear elements (LINEs) The most abundant LINE element in the tuatara is L2 (10%). Most of them are interspersed and can remain active. The longest L2 element found is 4 kb long and 83% of the sequences had ORF2p completely intact. The CR1 element is the second most repeated (4%). Phylogenetic analysis shows that these sequences are very different from those found in other nearby species such as lizards. Finally, less than 1% are elements belonging to L1, a low percentage since these elements tend to predominate in placental mammals. Usually, the predominant LINE elements are the CR1, contrary to what has been seen in the tuatara. This suggests that perhaps the genome repeats of sauropsids were very different compared to mammals, birds and lizards. Major histocompatibility complex elements (MHCs) The genes of the major histocompatibility complex (MHC) are known to play roles in disease resistance, mate choice, and kin recognition in various vertebrate species. Among known vertebrate genomes, MHCs are considered one of the most polymorphic. In the tuatara, 56 MHC genes have been identified; some of which are similar to MHCs of amphibians and mammals. Most MHCs that were annotated in the tuatara genome are highly conserved, however there is large genomic rearrangement observed in distant lepidosauria lineages. Short interspersed nuclear elements (SINEs) Many of the elements that have been analyzed are present in all amniotes, most are mammalian interspersed repeats or MIR, specifically the diversity of MIR subfamilies is the highest that has been studied so far in an amniote. 16 families of SINEs that were recently active have also been identified. DNA transposon The tuatara has 24 unique families of DNA transposons, and at least 30 subfamilies