fractional volume greater than 1.20. An amino acid residue located in a compressed region or a poorly refined region will have a fractional volume less than 0.80. Structural biologists often use excluded volume to help them find cavities, water-binding pockets, unexpected atomic overlaps or to identify problem areas in a protein structure. High quality protein structures should have relatively few residues with fractional volumes greater than 1.20 or less than 0.80. History Initially released in 2002, the VADAR web server has gone through a number of revisions and updates (now in version 1.8). The latest version of the VADAR web server supports the submission of either PDB formatted files or PDB accession numbers and generates extensive tables and high quality graphs for quantitatively and qualitatively assessing protein structures determined by X-ray crystallography, NMR spectroscopy, 3D-threading or homology modelling. A separate website supports the analysis of multiple protein chains – as might be generated from a standard NMR structure determination effort. See also Crystallography DSSP (hydrogen bond estimation algorithm) Nuclear magnetic resonance Protein Structure Evaluation Suite & Server (PROSESS) Protein structure prediction Resolution by Proxy (ResProx) Root-mean-square deviation Structural bioinformatics Structure validation References Biological databases