From spectra with rotational resolution, moments of inertia and hence bond lengths and angles can be determined "directly" (at least in principle). From less well-resolved spectra one can still determine important quantities like JT stabilization energies and energy barriers (e.g. to pseudorotation). However, in the whole spectral intensity distribution  of an electronic transition more information is encoded. It has been used to decide on the presence (or absence) of the geometric phase which is accumulated during the pseudorotational motion around the JT (or other type of) conical intersection. Prominent examples of either type are the ground (X) or an excited (B) state of Na. The Fourier transform of , the so-called autocorrelation function  reflects the motion of the wavepacket after an optical (= vertical) transition to the APES of the final electronic state. Typically it will move on the timescale of a vibrational period which is (for small molecules) of the order of 5–50 fs, i.e. ultrafast. Besides a nearly periodic motion, mode–mode interactions with very irregular (also chaotic) behaviour and spreading of the wavepacket may also occur. Near a conical intersection this will be accompanied/complemented by nonradiative transitions (termed internal conversion) to other APESs occurring on the same ultrafast time scale.
For the JT case the situation is somewhat special, as compared to a general conical intersection, because the different JT potential sheets are symmetry-related to each other and have (exactly or nearly) the same energy minimum. The "transition" between them is thus more oscillatory than one would normally expect, and their time-averaged populations are close to 1/2. For a more typical scenario a more general conical intersection is "required".
The JT effect still comes into play, namely in combination with a different nearby, in general non-degenerate electronic state.  The result is a pseudo Jahn–Teller effect, for example, of an E state interacting with an A state. This situation is common in JT systems, just as interactions between two nondegenerate electronic states are common for  non-JT systems. Examples are excited electronic states of NH and the benzene radical cation. Here, crossings between the E and A state APESs amount to triple intersections, which are associated with very complex spectral features (dense line structures and diffuse spectral envelopes under low resolution). The population transfer between the states is also ultrafast, so fast that fluorescence (proceeding on a nanosecond time scale) cannot compete. This helps to understand why the benzene cation, like many other organic radical cation, does not fluoresce.
To be sure, photochemical reactivity emerges when the internal conversion makes the system explore the nuclear configuration space such that new chemical species are formed. There is a plethora of femtosecond pump-probe spectroscopic techniques to reveal details of these processes occurring, for example, in the process of vision.