For each model, we compared the pairwise covariance scores for all positions and residuals in generated ( ̂︀ 𝐶 𝑖𝑗 𝛼𝛽) and the input (𝐶 𝑖𝑗 𝛼𝛽) alignment using the Pearson correlation coefficient 𝜌(︁{︁𝐶 𝑖𝑗 𝛼𝛽}︁,{︁ ̂︀ 𝐶 𝑖𝑗 𝛼𝛽}︁)︁. In the case of this study, the statistics were calculated for the input and synthetically generated datasets having 3,000 randomly selected samples. Synthetic data were reconstructed from the latent space points sampled according to the a priori chosen distribution, i.e., a Gaussian distribution with the zero mean and the variance of 2.