Over the years, combinations of methodologies and approaches have been emerging and evolving in chemoinformatics for various practical applications including, but not limited to, molecular representation, chemical space analysis, similarity searching, property prediction, and structure-activity relationships (SAR), to name a few examples. Such combinations can be influenced by the numerous attempts to identify the best single approach through benchmark or comparative studies. In many instances, the outcome is that the most appropriate approach depends on the study case or research system. This is frequent in molecular docking, one of the most widely used methods in computer-aided drug design (CADD). It serves as a fundamental technique for predicting the binding mode of bioactive compounds and conducting virtual screening . Due to the requirement of enhancing its reliability in pose prediction and performance in virtual screening, new docking algorithms and scoring functions have been developed and optimized. However, it is unlikely to identify a single procedure that overcomes others in terms of reliability and precision or proves to be suitable for all types of molecular targets .