MS and MS 2 data of the case study samples were acquired with DDA of the top 10 most intense peaks in negative polarity. The parameters were set with a scan window of 100 to 1100 Da, a full scan resolution of 60´000, MS 2 resolution of 30´000, a stepped normalized collision energy of 10, 30, 50 eV, and the additional parameters listed in Table . For each biological sample, an iterative exclusion list was prepared with IE-Omics , until either five injections or the maximum length of the exclusion list (5000 features) was reached.