In the latest version of MS Amanda (v3.0), eight new columns have therefore been added to the CSV output file: number of missed cleavages, number of residues, number of considered fragment ions, delta mass between the match peptide and the precursor, average MS2 error, assigned intensity fraction of the spectrum and the binomial score. Providing more information about each peptide-spectrum annotation will aid the rescoring engine in distinguishing between true and false PSMs. In addition to new features, MS Amanda 3.0 is now capable of automatically running Percolator after the MS Amanda search, also in the standalone version.