One of the major advantages of TPP is its ability to be deployed in a wide variety of environments, from personal interactive use on Windows laptops, on extensive large Linux compute clusters, to automated use within workflow engines or cloud computing environments. All tools have a interface, originally developed under Linux, but equally at home and natively compiled under Windows. Many TPP users have written custom scripts that string together TPP command-line invocations to easily reproduce their analysis with one command to simplify analyses and foster reproducibility.