The metabolomics community has defined standards for the metabolomics workflow analysis called Metabolomics Standards Initiative (MSI) . MSI gives minimal standards for reporting various data types and metadata obtained from different metabolomics techniques. It also gives standards for reporting data preprocessing and metabolite identification results. However, ensuring that the standards are followed while reporting the data and its result, is not enforced during metabolomics computational workflows, which makes it difficult to reuse the workflow. The reproducibility challenge in this tutorial is focused more on the computational metabolomics aspects, which are more dependent on the computational variations , such as the environment, parameters, execution, and minimal standards reporting. After generating the data, the first and foremost task is to submit the RAW metabolomics data files, directly obtained from the instrument, to a metabolomics repository such as MetaboLights, which adheres to minimal reporting standards for data and associated metadata . The second aspect is the analysis workflow used to obtain significant results, which can be highly context-specific but general enough to be standardised for a particular job. The basic computational metabolomics workflow includes (1) data preprocessing, (2) statistical analysis, and (3) annotation. Different R, Java, and Python packages, as well as tools with command line (CLI) versions and graphical user interface (GUI), have been developed to tackle each module of the computational metabolomics workflow .