When choosing a synthesis strategy for a protein, one should consider the properties of initial segments (Aligator scores) and the efficiency of the bracket (BracketMaker scores). It is up to an individual user to decide, for example, if a strategy with difficult starting segments but an efficient ligation plan is preferable to one with easy starting segments but a long reaction path. For more nuanced analyses, the BracketMaker interface enables unique methods of visually exploring data, such as modifying color settings to highlight a known problem segment from Aligator, then cycling through possible ligation orders to minimize this segment's path length. With our computational CPS tools, the information needed to make strategic decisions is readily accessible.