Visualization and modeling of chemical phenomena and concepts are essential for knowing, analyzing, and understanding things better as well as for establishing communication exchanges to share data and concepts in chemical research and education. For the last several decades, many computer graphics tools for drawing and visualizing chemical structures and properties have been generally used in both research and education. In chemical education, inducing curiosity of learners at the early stage is important. However, most of chemical concepts treating microscaled invisible phenomena are difficult to understand especially for beginners. Effective tools that can help learners to make image and to grasp the concepts are useful in this phase. This is reason why chemical educational textbooks and tools using color cartoons, pictures, and computer-graphics are nowadays common in actual educational scenes.