Table . Parameters employed across the different MS methods. For SWATH-only, cycle time represents the total scan time (constant across the whole chromatographic run). For MRM-HR+SWATH, cycle time represents the maximum scan time, since cycle time changes along the chromatographic run due to its dependency on the number of overlapping MRM transitions. Finally, the data acquisition sequence was set such as data for MRM-HR + SWATH and SWATH-only methods would be acquired sequentially for the same sample. That approach was taken in order to minimize batch effects when comparing the results for the same sample between the two different methodologies.