By visually inspecting the docking poses, researchers can identify critical interactions such as hydrogen bonds, ionic interactions, and hydrophobic contacts that are known to be important for binding but might not be adequately captured by the scoring function. It can also reveal artifacts or unrealistic binding modes that might occur due to algorithmic limitations or errors in the input data (e.g., incorrect protonation states or unusual torsional angles). Molecular visualization tools such as PyMOL , UCSF Chimera , or VMD are commonly used for inspecting docking poses. These tools provide 3D visualizations of the protein-ligand complex, allowing for detailed examination of the interaction interface.