Based on all the presented data, Cy3 range fluorophores appears to offer the highest compatibility with the tested food products, based on the inherent fluorescence profiles of target products and the concurrent visibility of Cy3 arrays. While Pacific Blue-labelled microarrays offer high SNR values, poor CV values bring into question its stability, which limits its applicability for lengthy incubations with food. Cy5 range fluorophores exhibit excellent performance but are compatible only with meat products. Finally, FITC range fluorophores offered comparatively poor performance. While a SNR of about 4 was observed with overlaid food samples, substantiating its potential use within food monitoring, better alternatives are available.