AutoBADDIE is a modular workflow to parameterize classical interatomic potentials for molecular systems. Atomic interactions of different functional forms can be added or excluded from the learned potential through the choice of terms included in the energy calculation. AutoBADDIE parameterizes an IP in three steps: 1) Autonomously determining the discrete atomic environments in the system; 2) enumerating bond, angle, dihedral, improper and pairwise interactions necessary to fully describe the system; 3) optimizing the enumerated parameters through end-to-end optimization to match the force and partial charges from quantum chemical training data.