To obtain a realistic-looking secondary structure bond network we ignore pairs to the two adjacent backbone beads. A similar strategy is employed in the GoMARTINI 6 model. In the tertiary network, we ignore side chain interactions with the backbone of the adjecent residues. While such patterns do exist in proteins, the OLIVES algorithm identifies fewer false positive hydrogen bond partners using this rule. After this procedure, we are left with two (possibly disjoint) undirected graphs for the secondary and tertiary networks, respectively. These are converted to weighted graphs using weights