A programming library for molecular scaffold functionalities named Scaffold Generator was implemented based on the Chemistry Development Kit (CDK). The openly available source code of Scaffold Generator can be found on GitHub: . It can be utilised to extract different types of scaffolds from input molecules and dissect them further into parent scaffolds using an enumerative generation of all possible ones or a dissection according to the scaffold tree prioritisation rules. Additionally, the scaffolds and parent scaffolds can be arranged in scaffold trees and networks with these hierarchies being visualised.