Every different color highlights a distinct monomer in the molecule. The conformation generation and the substructure searches were performed with RDKit v2023.9.0 [13]. Figure shows three RDKit-generated conformations of o-benzylphenol superimposed on each other. To accurately visualize the intersecting spheres and bonds, the resolution was increased to 150 and we instructed the algorithm to not filter nodes for intersecting. By default, the algorithm filters nodes for intersection. This means that a quick check is performed to estimate if two nodes intersect before calculating the exact intersection. Turning off this quick check slows down the calculation but makes sure that every intersection is accurately visualized in this particular case. The Scene API allows users to set or include specific calculations to create their own trade-off between accuracy and speed. Figure shows a wireframe of the lysozyme 9LYZ with a space-filling model of the bound bacterial cell wall trisaccharide NAM-NAG-NAM . The opacity of the