Hypothesis-Driven MD Simulations and Analysis are Essential When performing simulations of biomolecules, one should initiate the work with a research question in mind. Doing so will ensure that the system construction, force field selection, and other essential parameters are appropriate for the biomolecule and environment that the research question seeks to answer. Utilizing a hypothesis-driven approach to MD simulations ensures that the data generated aligns with the specific scientific questions being addressed and utilizes the most accurate system construction and parameters.