To better visualize the latent space, in Fig. , we plot the test set of sequences embedded in the reduced latent representation for each model and color the scatter points according to whether they feature verified-AMPs (orange), or non-verified-AMPs (blue), characteristics. We observe an agreement between the Silhouette scores previously discussed and the visual clustering in the scatter plots. The AAE-128 and Transformer-128 models form more distinct clusters than the other models, though all clusters still overlap as desired.