This section is divided into two subsections. In the first subsection, we discuss aspects of our results that are important from the point of view of developing new scientific methods that yield statistically robust and reliable outcomes. We report our findings on the effect of stochasticity in MD simulations at "long" timescales. We show how this intrinsic characteristic of MD can be used to our advantage in order to enhance the sampling of phase space through introduction of biases. Further, we determine binding affinities using two different methods and compare them to discuss the advantages and disadvantages of each method and highlight scenarios where a particular method should be preferred. In the second subsection, we discuss the important scientific findings of our study. We discuss the novel allosteric mechanisms uncovered using our simulations that help us understand the inhibitory effects of RQN and LZE. We would also like to highlight here that, although ADRP-tofacitinib complex has not been reported experimentally, it has still been included in this study as our main focus is on methodological advances and our findings in this regard hold true irrespective.