File size: 19,027 Bytes
ac2d6ec |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 |
[
{
"check_type": "node attribute",
"graph": {
"accession": "A0A6Q8PGS0_HUMAN",
"id": "A0A6Q8PGS0",
"synonyms": [
"A0A6Q8PGS0_HUMAN",
"ENSG00000288623"
],
"taxid": "9606"
},
"instruction": "Please check if the 'name' attribute of the node with type Protein and id A0A6Q8PGS0 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.",
"evidence": "Missing name: 'LOC128071547'.",
"label": "refute"
},
{
"check_type": "node attribute",
"graph": {
"accession": "A0A024RCX6_HUMAN",
"id": "A0A024RCX6",
"synonyms": [
"A0A024RCX6_HUMAN"
],
"taxid": "9606"
},
"instruction": "Please check if the 'name' attribute of the node with type Protein and id A0A024RCX6 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.",
"evidence": "Missing name: 'PPT2'.",
"label": "refute"
},
{
"check_type": "node attribute",
"graph": {
"accession": "A0A6Q8PFC9_HUMAN",
"id": "A0A6Q8PFC9",
"synonyms": [
"A0A6Q8PFC9_HUMAN",
"ENSG00000288634"
],
"taxid": "9606"
},
"instruction": "Please check if the 'name' attribute of the node with type Protein and id A0A6Q8PFC9 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.",
"evidence": "Missing name: 'LOC128031837'.",
"label": "refute"
},
{
"check_type": "node attribute",
"graph": {
"accession": "A0A6Q8PHS2_HUMAN",
"id": "A0A6Q8PHS2",
"synonyms": [
"A0A6Q8PHS2_HUMAN",
"ENSG00000288626"
],
"taxid": "9606"
},
"instruction": "Please check if the 'name' attribute of the node with type Protein and id A0A6Q8PHS2 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.",
"evidence": "Missing name: 'LOC128071544'.",
"label": "refute"
},
{
"check_type": "node attribute",
"graph": {
"id": "B4DSJ7",
"accession": "B4DSJ7_HUMAN",
"synonyms": [
"B4DSJ7_HUMAN"
],
"taxid": "9606",
"name": "DNMT3B"
},
"instruction": "Please check if the 'name' attribute of the node with type Protein and id B4DSJ7 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.",
"evidence": "The name of the node found in the KG is consistent with the one retrieved from the UniProt database, both being 'DNMT3B'.",
"label": "support"
},
{
"check_type": "existence",
"graph": {
"p": {
"name": "ACKR1",
"id": "Q16570-1",
"accession": "ACKR1_HUMAN",
"taxid": "9606",
"synonyms": [
"ACKR1_HUMAN",
"ACKR1",
"4NUU",
"4NUV",
"7P93",
"9606.ENSP00000357103",
"CHEMBL2321626",
"ENSG00000213088.12"
]
}
},
"instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'Q16570-1' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.",
"evidence": "The protein with ID 'Q16570-1' can be found from UniProtKB. And this node exists in the KG too.",
"label": "support"
},
{
"check_type": "existence",
"graph": {
"name": "C5orf17",
"id": "Q8NAS9",
"accession": "CE017_HUMAN",
"synonyms": [
"CE017_HUMAN",
"C5orf17"
],
"taxid": "9606"
},
"instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'Q8NAS9' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.",
"evidence": "The protein with ID 'Q8NAS9' is removed from UniProtKB. And this node no longer exists in the KG either.",
"label": "support"
},
{
"check_type": "existence",
"graph": {
"name": "XKRY2",
"id": "A2RUG3",
"accession": "XKRY2_HUMAN",
"synonyms": [
"XKRY2_HUMAN",
"XKRY2"
],
"taxid": "9606"
},
"instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'A2RUG3' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.",
"evidence": "The protein with ID 'A2RUG3' is removed from UniProtKB. And this node no longer exists in the KG either.",
"label": "support"
},
{
"check_type": "existence",
"graph": {
"name": "C3orf86",
"id": "P0DN24",
"accession": "CC086_HUMAN",
"synonyms": [
"CC086_HUMAN",
"C3orf86"
],
"taxid": "9606"
},
"instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'P0DN24' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.",
"evidence": "The protein with ID 'P0DN24' is removed from UniProtKB. And this node no longer exists in the KG either.",
"label": "support"
},
{
"check_type": "existence",
"graph": {
"p": {
"name": "ACSL5",
"id": "Q9ULC5-4",
"accession": "ACSL5_HUMAN",
"taxid": "9606",
"synonyms": [
"ACSL5_HUMAN",
"ACSL5",
"9606.ENSP00000348429",
"CHEMBL4105818",
"ENSG00000197142.11"
]
}
},
"instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'Q9ULC5-4' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.",
"evidence": "The protein with ID 'Q9ULC5-4' can be found from UniProtKB. And this node exists in the KG too.",
"label": "support"
},
{
"check_type": "one-hop",
"graph": {
"source node": {
"id": "P20645",
"type": "Protein"
},
"relationship": null,
"target node": {
"id": "Q13439",
"type": "Protein"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'P20645' to the node of type 'Protein' with id 'Q13439'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "Interaction exists between P20645 and Q13439, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.",
"label": "refute"
},
{
"check_type": "one-hop",
"graph": {
"source node": {
"id": "Q9NR63",
"type": "Protein"
},
"relationship": null,
"target node": {
"id": "Q06278",
"type": "Protein"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9NR63' to the node of type 'Protein' with id 'Q06278'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "Interaction exists between Q9NR63 and Q06278, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.",
"label": "refute"
},
{
"check_type": "one-hop",
"graph": {
"source node": {
"id": "Q9NR63",
"type": "Protein"
},
"relationship": null,
"target node": {
"id": "P05177",
"type": "Protein"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9NR63' to the node of type 'Protein' with id 'P05177'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "Interaction exists between Q9NR63 and P05177, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.",
"label": "refute"
},
{
"check_type": "one-hop",
"graph": {
"source node": {
"id": "Q9NR63",
"type": "Protein"
},
"relationship": null,
"target node": {
"id": "P29373",
"type": "Protein"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9NR63' to the node of type 'Protein' with id 'P29373'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "Interaction exists between Q9NR63 and P29373, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.",
"label": "refute"
},
{
"check_type": "one-hop",
"graph": {
"source node": {
"id": "Q9NR63",
"type": "Protein"
},
"relationship": null,
"target node": {
"id": "Q8NEX9",
"type": "Protein"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9NR63' to the node of type 'Protein' with id 'Q8NEX9'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "Interaction exists between Q9NR63 and Q8NEX9, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.",
"label": "refute"
},
{
"check_type": "one-hop",
"graph": {
"source node": {
"id": "P19878",
"type": "Protein"
},
"relationship": "CURATED_INTERACTS_WITH",
"target node": {
"id": "P14598",
"type": "Protein"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'P19878' to the node of type 'Protein' with id 'P14598'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "The relationship is supported by publication with PubMed ID: [12169629].",
"label": "support"
},
{
"check_type": "one-hop",
"graph": {
"source node": {
"id": "P61024",
"type": "Protein"
},
"relationship": "CURATED_INTERACTS_WITH",
"target node": {
"id": "P24941",
"type": "Protein"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'P61024' to the node of type 'Protein' with id 'P24941'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "The relationship is supported by publication with PubMed ID: [8601310].",
"label": "support"
},
{
"check_type": "existing one-hop",
"graph": {
"source node": {
"id": "Q8WYQ9",
"type": "Protein"
},
"relationship": "ASSOCIATED_WITH",
"target node": {
"id": "GO:1990234",
"type": "Cellular_component"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q8WYQ9' to the node of type 'Cellular_component' with id 'GO:1990234'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "According to the publication (PMID:33730579), there is a relationship between the two nodes, which matches the association between the two nodes in the knowledge graph.",
"label": "support"
},
{
"check_type": "existing one-hop",
"graph": {
"source node": {
"id": "Q9UN42",
"type": "Protein"
},
"relationship": "ASSOCIATED_WITH",
"target node": {
"id": "GO:0110165",
"type": "Cellular_component"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9UN42' to the node of type 'Cellular_component' with id 'GO:0110165'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "According to the publication (PMID:32549352), there is a relationship between the two nodes, which matches the association between the two nodes in the knowledge graph.",
"label": "support"
},
{
"check_type": "existing one-hop",
"graph": {
"source node": {
"id": "Q96MF6",
"type": "Protein"
},
"relationship": "ASSOCIATED_WITH",
"target node": {
"id": "GO:1990204",
"type": "Cellular_component"
}
},
"instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q96MF6' to the node of type 'Cellular_component' with id 'GO:1990204'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.",
"evidence": "According to the publication (PMID:31540029), there is a relationship between the two nodes, which matches the association between the two nodes in the knowledge graph.",
"label": "support"
}
] |