ompi-main/ompi/mpi/java/java/File.java
/*
 * Copyright (c) 2004-2007 The Trustees of Indiana University and Indiana
 *                         University Research and Technology
 *                         Corporation.  All rights reserved.
 * Copyright (c) 2004-2005 The University of Tennessee and The University
 *                         of Tennessee Research Foundation.  All rights
 *                         reserved.
 * Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
 *                         University of Stuttgart.  All rights reserved.
 * Copyright (c) 2004-2005 The Regents of the University of California.
 *                         All rights reserved.
 * Copyright (c) 2015      Los Alamos National Security, LLC. All rights
 *                         reserved.
 * Copyright (c) 2017-2018 FUJITSU LIMITED.  All rights reserved.
 * $COPYRIGHT$
 *
 * Additional copyrights may follow
 *
 * $HEADER$
 *
 *
 * IMPLEMENTATION DETAILS
 *
 * All methods with buffers that can be direct or non direct have
 * a companion argument 'db' which is true if the buffer is direct.
 *
 * Checking if a buffer is direct is faster in Java than C.
 */

package mpi;

import java.nio.*;
import static mpi.MPI.isHeapBuffer;
import static mpi.MPI.isDirectBuffer;
import static mpi.MPI.assertDirectBuffer;

/**
 * This class represents {@code MPI_File}.
 */
public final class File
{
	private long handle;
	private FileView view = new FileView(0, MPI.BYTE, MPI.BYTE, "native");
	private Status beginStatus;

	/**
	 * Java binding of {@code MPI_FILE_OPEN} using {@code MPI_INFO_NULL}.
	 * @param comm     communicator
	 * @param filename name of the file to open
	 * @param amode    file access mode
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public File(Comm comm, String filename, int amode) throws MPIException
	{
		MPI.check();
		handle = open(comm.handle, filename, amode, Info.NULL);
	}

	/**
	 * Java binding of {@code MPI_FILE_OPEN}.
	 * @param comm     communicator
	 * @param filename name of the file to open
	 * @param amode    file access mode
	 * @param info     info object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public File(Comm comm, String filename, int amode, Info info)
			throws MPIException
	{
		MPI.check();
		handle = open(comm.handle, filename, amode, info.handle);
	}

	private native long open(long comm, String filename, int amode, long info)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_CLOSE}.
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void close() throws MPIException
	{
		MPI.check();
		handle = close(handle);
	}

	private native long close(long fh) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_DELETE} using {@code MPI_INFO_NULL}.
	 * @param filename name of the file to delete
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public static void delete(String filename) throws MPIException
	{
		MPI.check();
		delete(filename, Info.NULL);
	}

	/**
	 * Java binding of {@code MPI_FILE_DELETE}.
	 * @param filename name of the file to delete
	 * @param info     info object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public static void delete(String filename, Info info) throws MPIException
	{
		MPI.check();
		delete(filename, info.handle);
	}

	private static native void delete(String filename, long info)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_SET_SIZE}.
	 * @param size size to truncate or expand file
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void setSize(long size) throws MPIException
	{
		MPI.check();
		setSize(handle, size);
	}

	private native void setSize(long fh, long size) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_PREALLOCATE}.
	 * @param size size to preallocate file
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void preallocate(long size) throws MPIException
	{
		MPI.check();
		preallocate(handle, size);
	}

	private native void preallocate(long fh, long size) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_GET_SIZE}.
	 * @return size of file in bytes
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public long getSize() throws MPIException
	{
		MPI.check();
		return getSize(handle);
	}

	private native long getSize(long fh) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_GET_GROUP}.
	 * @return group which opened the file
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Group getGroup() throws MPIException
	{
		MPI.check();
		return new Group(getGroup(handle));
	}

	private native long getGroup(long fh) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_GET_AMODE}.
	 * @return file access mode to open the file
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public int getAMode() throws MPIException
	{
		MPI.check();
		return getAMode(handle);
	}

	private native int getAMode(long fh) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_SET_INFO}.
	 * @param info info object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void setInfo(Info info) throws MPIException
	{
		MPI.check();
		setInfo(handle, info.handle);
	}

	private native void setInfo(long fh, long info) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_GET_INFO}.
	 * @return new info object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Info getInfo() throws MPIException
	{
		MPI.check();
		return new Info(getInfo(handle));
	}

	private native long getInfo(long fh) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_SET_VIEW} using {@code MPI_INFO_NULL}.
	 * @param disp     displacement
	 * @param etype    elementary datatype
	 * @param filetype filetype
	 * @param datarep  data representation
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void setView(long disp, Datatype etype,
			Datatype filetype, String datarep)
					throws MPIException
	{
		MPI.check();
		setView(handle, disp, etype.handle, filetype.handle, datarep, Info.NULL);
		view = new FileView(disp, etype, filetype, datarep);
	}

	/**
	 * Java binding of {@code MPI_FILE_SET_VIEW}.
	 * @param disp     displacement
	 * @param etype    elementary datatype
	 * @param filetype filetype
	 * @param datarep  data representation
	 * @param info     info object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void setView(long disp, Datatype etype,
			Datatype filetype, String datarep, Info info)
					throws MPIException
	{
		MPI.check();
		setView(handle, disp, etype.handle, filetype.handle, datarep, info.handle);
		view = new FileView(disp, etype, filetype, datarep);
	}

	private native void setView(
			long fh, long disp, long etype,
			long filetype, String datarep, long info) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_GET_VIEW}.
	 * @return file view
	 */
	public FileView getView()
	{
		return view;
	}

	/**
	 * Java binding of {@code MPI_FILE_READ_AT}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status readAt(long offset, Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		readAt(handle, offset, buf, db, off, count,
				type.handle, type.baseType, status.data);

		return status;
	}

	private native void readAt(
			long fh, long fileOffset, Object buf, boolean db, int offset,
			int count, long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_AT_ALL}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status readAtAll(long offset, Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		readAtAll(handle, offset, buf, db, off, count,
				type.handle, type.baseType, status.data);

		return status;
	}

	private native void readAtAll(
			long fh, long fileOffset, Object buf, boolean db, int offset,
			int count, long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_AT}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status writeAt(long offset, Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		writeAt(handle, offset, buf, db, off, count,
				type.handle, type.baseType, status.data);

		return status;
	}

	private native void writeAt(
			long fh, long fileOffset, Object buf, boolean db, int offset,
			int count, long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_AT_ALL}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status writeAtAll(long offset, Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		writeAtAll(handle, offset, buf, db, off, count,
				type.handle, type.baseType, status.data);

		return status;
	}

	private native void writeAtAll(
			long fh, long fileOffset, Object buf, boolean db, int offset,
			int count, long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IREAD_AT}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iReadAt(long offset, Buffer buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iReadAt(handle, offset, buf, count, type.handle));
		req.addRecvBufRef(buf);
		return req;
	}

	private native long iReadAt(
			long fh, long offset, Buffer buf, int count, long type)
					throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IREAD_AT_ALL}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iReadAtAll(long offset, Buffer buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iReadAtAll(handle, offset, buf, count, type.handle));
		req.addRecvBufRef(buf);
		return req;
	}

	private native long iReadAtAll(
			long fh, long offset, Buffer buf, int count, long type)
					throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IWRITE_AT}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iWriteAt(long offset, Buffer buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iWriteAt(handle, offset, buf, count, type.handle));
		req.addSendBufRef(buf);
		return req;
	}

	private native long iWriteAt(
			long fh, long offset, Buffer buf, int count, long type)
					throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IWRITE_AT_ALL}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iWriteAtAll(long offset, Buffer buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iWriteAtAll(handle, offset, buf, count, type.handle));
		req.addSendBufRef(buf);
		return req;
	}

	private native long iWriteAtAll(
			long fh, long offset, Buffer buf, int count, long type)
					throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status read(Object buf, int count, Datatype type) throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		read(handle, buf, db, off, count, type.handle, type.baseType, status.data);
		return status;
	}

	private native void read(
			long fh, Object buf, boolean db, int offset,
			int count, long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_ALL}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status readAll(Object buf, int count, Datatype type) throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		readAll(handle, buf,db,off, count, type.handle, type.baseType, status.data);
		return status;
	}

	private native void readAll(
			long fh, Object buf, boolean db, int offset,
			int count, long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status write(Object buf, int count, Datatype type) throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		write(handle, buf, db, off, count, type.handle, type.baseType, status.data);
		return status;
	}

	private native void write(
			long fh, Object buf, boolean db, int offset,
			int count, long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_ALL}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status writeAll(Object buf, int count, Datatype type) throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		writeAll(handle, buf,db,off, count, type.handle,type.baseType, status.data);
		return status;
	}

	private native void writeAll(
			long fh, Object buf, boolean db, int offset,
			int count, long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IREAD}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iRead(Buffer buf, int count, Datatype type) throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iRead(handle, buf, count, type.handle));
		req.addRecvBufRef(buf);
		return req;
	}

	private native long iRead(long fh, Buffer buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IREAD_ALL}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iReadAll(Buffer buf, int count, Datatype type) throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iReadAll(handle, buf, count, type.handle));
		req.addRecvBufRef(buf);
		return req;
	}

	private native long iReadAll(long fh, Buffer buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IWRITE}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iWrite(Buffer buf, int count, Datatype type) throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iWrite(handle, buf, count, type.handle));
		req.addRecvBufRef(buf);
		return req;
	}

	private native long iWrite(long fh, Buffer buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IWRITE_ALL}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iWriteAll(Buffer buf, int count, Datatype type) throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iWriteAll(handle, buf, count, type.handle));
		req.addRecvBufRef(buf);
		return req;
	}

	private native long iWriteAll(long fh, Buffer buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_SEEK}.
	 * @param offset file offset
	 * @param whence update mode
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void seek(long offset, int whence) throws MPIException
	{
		MPI.check();
		seek(handle, offset, whence);
	}

	private native void seek(long fh, long offset, int whence) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_GET_POSITION}.
	 * @return offset of individual pointer
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public long getPosition() throws MPIException
	{
		MPI.check();
		return getPosition(handle);
	}

	private native long getPosition(long fh) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_GET_BYTE_OFFSET}.
	 * @param offset offset
	 * @return absolute byte position of offset
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public long getByteOffset(long offset) throws MPIException
	{
		MPI.check();
		return getByteOffset(handle, offset);
	}

	private native long getByteOffset(long fh, long offset) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_SHARED}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status readShared(Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		readShared(handle, buf, db, off, count,
				type.handle, type.baseType, status.data);

		return status;
	}

	private native void readShared(
			long fh, Object buf, boolean db, int offset, int count,
			long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_SHARED}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status writeShared(Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		writeShared(handle, buf, db, off, count,
				type.handle, type.baseType, status.data);

		return status;
	}

	private native void writeShared(
			long fh, Object buf, boolean db, int offset, int count,
			long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IREAD_SHARED}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iReadShared(Buffer buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iReadShared(handle, buf, count, type.handle));
		req.addRecvBufRef(buf);
		return req;
	}

	private native long iReadShared(long fh, Buffer buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_IWRITE_SHARED}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return request object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Request iWriteShared(Buffer buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		assertDirectBuffer(buf);
		Request req = new Request(iWriteShared(handle, buf, count, type.handle));
		req.addSendBufRef(buf);
		return req;
	}

	private native long iWriteShared(long fh, Buffer buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_ORDERED}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status readOrdered(Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		readOrdered(handle, buf, db, off, count,
				type.handle, type.baseType, status.data);

		return status;
	}

	private native void readOrdered(
			long fh, Object buf, boolean db, int offset, int count,
			long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_ORDERED}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status writeOrdered(Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();
		int off = 0;
		boolean db = false;
		Status status = new Status();

		if(buf instanceof Buffer && !(db = ((Buffer)buf).isDirect()))
		{
			off = type.getOffset(buf);
			buf = ((Buffer)buf).array();
		}

		writeOrdered(handle, buf, db, off, count,
				type.handle, type.baseType, status.data);

		return status;
	}

	private native void writeOrdered(
			long fh, Object buf, boolean db, int offset, int count,
			long type, int baseType, long[] stat) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_SEEK_SHARED}.
	 * @param offset file offset
	 * @param whence update mode
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void seekShared(long offset, int whence) throws MPIException
	{
		MPI.check();
		seekShared(handle, offset, whence);
	}

	private native void seekShared(long fh, long offset, int whence)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_GET_POSITION_SHARED}.
	 * @return offset of individual pointer
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public long getPositionShared() throws MPIException
	{
		MPI.check();
		return getPositionShared(handle);
	}

	private native long getPositionShared(long fh) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_AT_ALL_BEGIN}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void readAtAllBegin(long offset, Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			readAtAllBegin(handle, offset, buf, count, type.handle);
		}
		else
		{
			int off = 0;
			Status status = new Status();

			if(isHeapBuffer(buf))
			{
				off = type.getOffset(buf);
				buf = ((Buffer)buf).array();
			}

			readAtAll(handle, offset, buf, false, off, count,
					type.handle, type.baseType, status.data);

			beginStatus = status;
		}
	}

	private native void readAtAllBegin(
			long fh, long offset, Object buf, int count, long type)
					throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_AT_ALL_END}.
	 * @param buf buffer
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status readAtAllEnd(Object buf) throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			Status status = new Status();
			readAtAllEnd(handle, buf, status.data);
			return status;
		}
		else
		{
			return getBeginStatus();
		}
	}

	private native void readAtAllEnd(long fh, Object buf, long[] stat)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_AT_ALL_BEGIN}.
	 * @param offset file offset
	 * @param buf    buffer
	 * @param count  number of items in buffer
	 * @param type   datatype of each buffer element
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void writeAtAllBegin(long offset, Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			writeAtAllBegin(handle, offset, buf, count, type.handle);
		}
		else
		{
			int off = 0;
			Status status = new Status();

			if(isHeapBuffer(buf))
			{
				off = type.getOffset(buf);
				buf = ((Buffer)buf).array();
			}

			writeAtAll(handle, offset, buf, false, off, count,
					type.handle, type.baseType, status.data);

			beginStatus = status;
		}
	}

	private native void writeAtAllBegin(
			long fh, long fileOffset, Object buf, int count, long type)
					throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_AT_ALL_END}.
	 * @param buf buffer
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status writeAtAllEnd(Object buf) throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			Status status = new Status();
			writeAtAllEnd(handle, buf, status.data);
			return status;
		}
		else
		{
			return getBeginStatus();
		}
	}

	private native void writeAtAllEnd(long fh, Object buf, long[] stat)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_ALL_BEGIN}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void readAllBegin(Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			readAllBegin(handle, buf, count, type.handle);
		}
		else
		{
			int off = 0;
			Status status = new Status();

			if(isHeapBuffer(buf))
			{
				off = type.getOffset(buf);
				buf = ((Buffer)buf).array();
			}

			readAll(handle, buf, false, off, count,
					type.handle, type.baseType, status.data);

			beginStatus = status;
		}
	}

	private native void readAllBegin(long fh, Object buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_ALL_END}.
	 * @param buf buffer
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status readAllEnd(Object buf) throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			Status status = new Status();
			readAllEnd(handle, buf, status.data);
			return status;
		}
		else
		{
			return getBeginStatus();
		}
	}

	private native void readAllEnd(long fh, Object buf, long[] stat)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_ALL_BEGIN}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void writeAllBegin(Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			writeAllBegin(handle, buf, count, type.handle);
		}
		else
		{
			int off = 0;
			Status status = new Status();

			if(isHeapBuffer(buf))
			{
				off = type.getOffset(buf);
				buf = ((Buffer)buf).array();
			}

			writeAll(handle, buf, false, off, count,
					type.handle, type.baseType, status.data);

			beginStatus = status;
		}
	}

	private native void writeAllBegin(long fh, Object buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_ALL_END}.
	 * @param buf buffer
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status writeAllEnd(Object buf) throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			Status status = new Status();
			writeAllEnd(handle, buf, status.data);
			return status;
		}
		else
		{
			return getBeginStatus();
		}
	}

	private native void writeAllEnd(long fh, Object buf, long[] stat)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_ORDERED_BEGIN}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void readOrderedBegin(Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			readOrderedBegin(handle, buf, count, type.handle);
		}
		else
		{
			int off = 0;
			Status status = new Status();

			if(isHeapBuffer(buf))
			{
				off = type.getOffset(buf);
				buf = ((Buffer)buf).array();
			}

			readOrdered(handle, buf, false, off, count,
					type.handle, type.baseType, status.data);

			beginStatus = status;
		}
	}

	private native void readOrderedBegin(long fh, Object buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_READ_ORDERED_END}.
	 * @param buf buffer
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status readOrderedEnd(Object buf) throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			Status status = new Status();
			readOrderedEnd(handle, buf, status.data);
			return status;
		}
		else
		{
			return getBeginStatus();
		}
	}

	private native void readOrderedEnd(long fh, Object buf, long[] stat)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_ORDERED_BEGIN}.
	 * @param buf   buffer
	 * @param count number of items in buffer
	 * @param type  datatype of each buffer element
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void writeOrderedBegin(Object buf, int count, Datatype type)
			throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			writeOrderedBegin(handle, buf, count, type.handle);
		}
		else
		{
			int off = 0;
			Status status = new Status();

			if(isHeapBuffer(buf))
			{
				off = type.getOffset(buf);
				buf = ((Buffer)buf).array();
			}

			writeOrdered(handle, buf, false, off, count,
					type.handle, type.baseType, status.data);

			beginStatus = status;
		}
	}

	private native void writeOrderedBegin(long fh, Object buf, int count, long type)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_WRITE_ORDERED_END}.
	 * @param buf buffer
	 * @return status object
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Status writeOrderedEnd(Object buf) throws MPIException
	{
		MPI.check();

		if(isDirectBuffer(buf))
		{
			Status status = new Status();
			writeOrderedEnd(handle, buf, status.data);
			return status;
		}
		else
		{
			return getBeginStatus();
		}
	}

	private native void writeOrderedEnd(long fh, Object buf, long[] stat)
			throws MPIException;

	private Status getBeginStatus()
	{
		Status s = beginStatus;
		beginStatus = null;
		return s;
	}

	/**
	 * Java binding of {@code MPI_FILE_GET_TYPE_EXTENT}.
	 * @param type		type of data
	 * @return datatype extent
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public int getTypeExtent(Datatype type) throws MPIException
	{
		MPI.check();
		return getTypeExtent(handle, type.handle) / type.baseSize;
	}

	private native int getTypeExtent(long fh, long type) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_SET_ATOMICITY}.
	 * @param atomicity true to set atomic mode, false to set nonatomic mode
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void setAtomicity(boolean atomicity) throws MPIException
	{
		MPI.check();
		setAtomicity(handle, atomicity);
	}

	private native void setAtomicity(long fh, boolean atomicity)
			throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_GET_ATOMICITY}.
	 * @return current consistency of the file
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public boolean getAtomicity() throws MPIException
	{
		MPI.check();
		return getAtomicity(handle);
	}

	private native boolean getAtomicity(long fh) throws MPIException;

	/**
	 * Java binding of {@code MPI_FILE_SYNC}.
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void sync() throws MPIException
	{
		MPI.check();
		sync(handle);
	}

	private native void sync(long handle) throws MPIException;

	/**
	 * Java binding of the MPI operation {@code MPI_FILE_SET_ERRHANDLER}.
	 * @param errhandler new MPI error handler for file
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void setErrhandler(Errhandler errhandler) throws MPIException
	{
		MPI.check();
		setErrhandler(handle, errhandler.handle);
	}

	private native void setErrhandler(long fh, long errhandler)
			throws MPIException;

	/**
	 * Java binding of the MPI operation {@code MPI_FILE_GET_ERRHANDLER}.
	 * @return MPI error handler currently associated with file
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public Errhandler getErrhandler() throws MPIException
	{
		MPI.check();
		return new Errhandler(getErrhandler(handle));
	}

	private native long getErrhandler(long fh);

	/**
	 * Java binding of the MPI operation {@code MPI_FILE_CALL_ERRHANDLER}.
	 * @param errorCode error code
	 * @throws MPIException Signals that an MPI error of some sort has occurred.
	 */
	public void callErrhandler(int errorCode) throws MPIException
	{
		callErrhandler(handle, errorCode);
	}

	private native void callErrhandler(long handle, int errorCode)
			throws MPIException;

} // File
