Map < Integer , BioAssemblyInfo > function ( ) { return transformationMap ; }
returns a map of bioassembly transformations concode_field_sep Integer currentBioMolecule concode_elem_sep double[] shift concode_elem_sep int currentMmSize concode_elem_sep Logger logger concode_elem_sep Matrix currentMatrix concode_elem_sep Map<Integer,BioAssemblyInfo> transformationMap concode_elem_sep List<BiologicalAssemblyTransformation> transformations concode_elem_sep List<String> currentChainIDs concode_elem_sep int modelNumber concode_field_sep boolean readMatrix concode_elem_sep void saveMatrix concode_elem_sep void addToCurrentChainList concode_elem_sep void pdb_REMARK_350_Handler concode_elem_sep int getSizefromString concode_elem_sep int getMmSize concode_elem_sep void initialize