Allele function ( final double arg0 ) { return isInformative ( arg0 ) ? mostLikely : Allele . NO_CALL ; }
get the most likely allele if isinformative log10thresholdforinformative is true , or no_call otherwise concode_field_sep double log10LikelihoodOfMostLikely concode_elem_sep Allele mostLikely concode_elem_sep Allele secondMostLikely concode_elem_sep double log10LikelihoodOfSecondBest concode_elem_sep double INFORMATIVE_LIKELIHOOD_THRESHOLD concode_elem_sep MostLikelyAllele NO_CALL concode_field_sep Allele getSecondMostLikelyAllele concode_elem_sep double getLog10LikelihoodOfSecondBest concode_elem_sep boolean isInformative concode_elem_sep boolean isInformative concode_elem_sep Allele getMostLikelyAllele concode_elem_sep double getLog10LikelihoodOfMostLikely