boolean function ( ) { return ( ! Double . isNaN ( CONTAMINATION_FRACTION ) && CONTAMINATION_FRACTION > 0.0 ) || ( sampleContamination != null && ! sampleContamination . isEmpty ( ) ) ; }
returns true if there is some sample contamination present , false otherwise . concode_field_sep GenotypeCalculationArgumentCollection genotypeArgs concode_elem_sep OutputMode outputMode concode_elem_sep boolean annotateAllSitesWithPLs concode_elem_sep double DEFAULT_CONTAMINATION_FRACTION concode_elem_sep GenotypingOutputMode genotypingOutputMode concode_elem_sep DefaultedMap<String,Double> sampleContamination concode_elem_sep long serialVersionUID concode_elem_sep double CONTAMINATION_FRACTION concode_elem_sep File CONTAMINATION_FRACTION_FILE concode_elem_sep AFCalculatorImplementation requestedAlleleFrequencyCalculationModel concode_elem_sep File exactCallsLog concode_elem_sep FeatureInput<VariantContext> alleles concode_field_sep Map<String,Double> getSampleContamination concode_elem_sep Double getSampleContamination concode_elem_sep void setSampleContamination concode_elem_sep void copyStandardCallerArgsFrom