SubstitutionMatrix < AminoAcidCompound > function ( ) { return getAminoAcidMatrix ( "srini_string" ) ; }
returns pam 250 matrix by dayhoff concode_field_sep Map<String,SubstitutionMatrix<AminoAcidCompound>> aminoAcidMatrices concode_elem_sep Map<String,SubstitutionMatrix<NucleotideCompound>> nucleotideMatrices concode_field_sep SubstitutionMatrix<AminoAcidCompound> getMatrixFromAAINDEX concode_elem_sep InputStreamReader getReader concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum100 concode_elem_sep SubstitutionMatrix<NucleotideCompound> getNuc4_4 concode_elem_sep SubstitutionMatrix<NucleotideCompound> getNucleotideMatrix concode_elem_sep SubstitutionMatrix<NucleotideCompound> getNuc4_2 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getAminoAcidSubstitutionMatrix concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getAminoAcidMatrix concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum90 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum50 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum60 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getIdentity concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum70 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum80 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum65 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum75 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum85 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum30 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum40 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum62 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum35 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum45 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getGonnet250 concode_elem_sep SubstitutionMatrix<AminoAcidCompound> getBlosum55