String function ( ) { return getSequenceAsString ( ) ; }
provides standard java language access to results of #getsequenceasstring . concode_field_sep int numBefore concode_elem_sep S original concode_elem_sep int numGapPositions concode_elem_sep int[] sequenceFromAlignment concode_elem_sep AlignedSequence<S,C> prev concode_elem_sep int length concode_elem_sep int numAfter concode_elem_sep Location location concode_elem_sep long serialVersionUID concode_elem_sep int numGaps concode_elem_sep int[] alignmentFromSequence concode_elem_sep String gap concode_field_sep Point getStart concode_elem_sep boolean isCircular concode_elem_sep void clearCache concode_elem_sep SequenceView<C> getSubSequence concode_elem_sep int countCompounds concode_elem_sep int getNumGaps concode_elem_sep C getCompoundAt concode_elem_sep Iterator<C> iterator concode_elem_sep void setLocation concode_elem_sep int getLastIndexOf concode_elem_sep SequenceView<C> getInverse concode_elem_sep int getOverlapCount concode_elem_sep Point getEnd concode_elem_sep int getAlignmentIndexAt concode_elem_sep boolean isGap concode_elem_sep AccessionID getAccession concode_elem_sep int getIndexOf concode_elem_sep S getOriginalSequence concode_elem_sep int getSequenceIndexAt concode_elem_sep List<C> getAsList concode_elem_sep int getNumGapPositions concode_elem_sep String getSequenceAsString concode_elem_sep int getLength concode_elem_sep Location getLocationInAlignment concode_elem_sep CompoundSet<C> getCompoundSet concode_elem_sep double getCoverage