HashSet < String > function ( ) { return excludingPTM ; }
returns the list of ptms to ignore . concode_field_sep double ratioResolution concode_elem_sep boolean ignoreNullIntensities concode_elem_sep MatchValidationLevel peptideValidation concode_elem_sep MatchValidationLevel psmValidation concode_elem_sep boolean ignoreMissedCleavages concode_elem_sep double percentile concode_elem_sep int minUnique concode_elem_sep HashSet<String> excludingPTM concode_elem_sep MatchValidationLevel proteinValidation concode_field_sep void addExcludingPtm concode_elem_sep void setProteinValidationLevel concode_elem_sep void setPeptideValidationLevel concode_elem_sep boolean isIgnoreMissedCleavages concode_elem_sep int getMinUnique concode_elem_sep void emptyPTMList concode_elem_sep MatchValidationLevel getPeptideValidationLevel concode_elem_sep boolean isIgnoreNullIntensities concode_elem_sep void setPercentile concode_elem_sep void setIgnoreMissedCleavages concode_elem_sep void setIgnoreNullIntensities concode_elem_sep void setPsmValidationLevel concode_elem_sep boolean isSameAs concode_elem_sep RatioEstimationSettings clone concode_elem_sep double getRatioResolution concode_elem_sep MatchValidationLevel getProteinValidationLevel concode_elem_sep void setMinUnique concode_elem_sep void setRatioResolution concode_elem_sep MatchValidationLevel getPsmValidationLevel concode_elem_sep double getPercentile