GATKReport function ( final String arg0 , GATKReportTable . Sorting arg1 , final String ... arg2 ) { return newSimpleReportWithDescription ( arg0 , "srini_string" , arg1 , arg2 ) ; }
the constructor for a simplified gatk report . simplified gatk report are designed for reports that do not need the advanced functionality of a full gatk report . a simple gatk report consists of : - a single table - no primary key it is hidden optional : - only untyped columns . as long as the data is an object , it will be accepted . - default column values being empty strings . limitations : - a simple gatk report can not contain multiple tables . - it can not contain typed columns , which prevents arithmetic gathering . concode_field_sep NavigableMap<String,GATKReportTable> tables concode_elem_sep GATKReportVersion version concode_elem_sep String GATKREPORT_HEADER_PREFIX concode_elem_sep GATKReportVersion LATEST_REPORT_VERSION concode_elem_sep String SEPARATOR concode_field_sep void loadReport concode_elem_sep GATKReportVersion getVersion concode_elem_sep void addTables concode_elem_sep void concat concode_elem_sep void addRow concode_elem_sep void print concode_elem_sep void print concode_elem_sep GATKReportTable getTable concode_elem_sep Collection<GATKReportTable> getTables concode_elem_sep boolean isSameFormat concode_elem_sep boolean equals concode_elem_sep SortedSet<String> getReadGroups concode_elem_sep void addTable concode_elem_sep void addTable concode_elem_sep void addTable concode_elem_sep GATKReport newSimpleReportWithDescription