Index function ( final File arg0 ) { Utils . nonNull ( arg0 ) ; final Index loc0 = loadTribbleIndex ( arg0 ) ; if ( loc0 != null ) { return loc0 ; } final Index loc1 = loadTabixIndex ( arg0 ) ; if ( loc1 != null ) { return loc1 ; } return null ; }
loads and returns the index of the feature file or null if there is no index . first it tries to load the tribble index and then to load the tabix index . concode_field_sep Logger logger concode_field_sep void checkIndexVersionAndModificationTime concode_elem_sep SAMSequenceDictionary createSequenceDictionaryFromFeatureIndex concode_elem_sep Index loadTabixIndex concode_elem_sep boolean isSequenceDictionaryFromIndex concode_elem_sep Index loadTribbleIndex concode_elem_sep SAMSequenceDictionary getSamSequenceDictionaryFromIndex