void function ( S arg0 ) { if ( length == null ) { length = arg0 . getLength ( ) ; } if ( arg0 . getLength ( ) != length ) { throw new IllegalArgumentException ( arg0 . getAccession ( ) + "srini_string" + arg0 . getLength ( ) + "srini_string" + length ) ; } sequences . add ( arg0 ) ; }
a sequence that has been aligned to other sequences will have inserts . concode_field_sep List<S> sequences concode_elem_sep Integer length concode_field_sep void printConservation concode_elem_sep int getSize concode_elem_sep void printSequenceAlignmentWeb concode_elem_sep int getLength concode_elem_sep List<S> getAlignedSequences concode_elem_sep String toString concode_elem_sep String toString concode_elem_sep String toString concode_elem_sep String toString concode_elem_sep List<C> getCompoundsAt concode_elem_sep CompoundSet<C> getCompoundSet concode_elem_sep S getAlignedSequence concode_elem_sep boolean removeAlignedSequence