int function ( ) { return length ; }
get the length of the msa where it is assumed that all sequence position concode_field_sep List<S> sequences concode_elem_sep Integer length concode_field_sep void printConservation concode_elem_sep int getSize concode_elem_sep void printSequenceAlignmentWeb concode_elem_sep void addAlignedSequence concode_elem_sep List<S> getAlignedSequences concode_elem_sep String toString concode_elem_sep String toString concode_elem_sep String toString concode_elem_sep String toString concode_elem_sep List<C> getCompoundsAt concode_elem_sep CompoundSet<C> getCompoundSet concode_elem_sep S getAlignedSequence concode_elem_sep boolean removeAlignedSequence