Boolean function ( ) { return probabilitsticScoreCalculation ; }
indicates whether a probabilistic ptm score is required . concode_field_sep double probabilisticScoreThreshold concode_elem_sep double flr concode_elem_sep boolean estimateFlr concode_elem_sep Boolean probabilisticScoreNeutralLosses concode_elem_sep Boolean alignNonConfidentPTMs concode_elem_sep long serialVersionUID concode_elem_sep Boolean probabilitsticScoreCalculation concode_elem_sep PtmScore selectedProbabilisticScore concode_elem_sep SequenceMatchingPreferences sequenceMatchingPreferences concode_field_sep double getProbabilisticScoreThreshold concode_elem_sep Boolean isProbabilisticScoreNeutralLosses concode_elem_sep void setProbabilisticScoreThreshold concode_elem_sep void setFlrThreshold concode_elem_sep void setProbabilitsticScoreCalculation concode_elem_sep void setSequenceMatchingPreferences concode_elem_sep double getFlrThreshold concode_elem_sep void setSelectedProbabilisticScore concode_elem_sep void setEstimateFlr concode_elem_sep boolean isEstimateFlr concode_elem_sep void setAlignNonConfidentPTMs concode_elem_sep PtmScore getSelectedProbabilisticScore concode_elem_sep void setProbabilisticScoreNeutralLosses concode_elem_sep Boolean getAlignNonConfidentPTMs concode_elem_sep String getShortDescription concode_elem_sep boolean equals concode_elem_sep SequenceMatchingPreferences getSequenceMatchingPreferences