boolean function ( ) { return noOverlap ; }
tells whether after having added atoms to grid the i and j grids are not overlapping . overlap is defined as enclosing bounds of the 2 grids being no more than one cell size apart . concode_field_sep boolean noOverlap concode_elem_sep int SCALE concode_elem_sep BoundingBox ibounds concode_elem_sep GridCell[][][] cells concode_elem_sep Atom[] jAtoms concode_elem_sep int[] bounds concode_elem_sep double cutoff concode_elem_sep int cellSize concode_elem_sep BoundingBox jbounds concode_elem_sep Atom[] iAtoms concode_field_sep void addAtoms concode_elem_sep void addAtoms concode_elem_sep void addAtoms concode_elem_sep void addAtoms concode_elem_sep int xintgrid2xgridindex concode_elem_sep int yintgrid2ygridindex concode_elem_sep void findFullGridIntBounds concode_elem_sep int zintgrid2zgridindex concode_elem_sep int getFloor concode_elem_sep int[] getIntBounds concode_elem_sep void fillGrid concode_elem_sep double getCutoff concode_elem_sep AtomContactSet getContacts