String function ( String arg0 ) { assert arg0 != null ; final Matcher loc0 = SequenceUtil . WHITE_SPACE . matcher ( arg0 ) ; arg0 = loc0 . replaceAll ( "srini_string" ) . toUpperCase ( ) ; return arg0 ; }
removes all whitespace chars in the sequence string concode_field_sep Pattern DIGIT concode_elem_sep Pattern NONWORD concode_elem_sep Pattern AMBIGUOUS_AA concode_elem_sep Pattern NON_AA concode_elem_sep Pattern AA concode_elem_sep Pattern AMBIGUOUS_NUCLEOTIDE concode_elem_sep Pattern WHITE_SPACE concode_elem_sep Pattern NUCLEOTIDE concode_elem_sep Pattern NON_NUCLEOTIDE concode_field_sep boolean isNonAmbNucleotideSequence concode_elem_sep String deepCleanSequence concode_elem_sep boolean isAmbiguosProtein concode_elem_sep List<FastaSequence> readFasta concode_elem_sep boolean isProteinSequence concode_elem_sep boolean isNucleotideSequence concode_elem_sep void writeFasta concode_elem_sep void writeFasta