Genotype function ( final String arg0 , final int arg1 ) { final GenotypeBuilder loc0 = new GenotypeBuilder ( arg0 ) ; switch ( arg1 ) { case 1 : loc0 . alleles ( HAPLOID_NO_CALL ) ; break ; case 2 : loc0 . alleles ( DIPLOID_NO_CALL ) ; break ; default : loc0 . alleles ( Collections . nCopies ( arg1 , Allele . NO_CALL ) ) ; break ; } return loc0 . make ( ) ; }
create a new genotype object for a sample that 's missing from the vc i.e. , in the output header . defaults to a diploid no call genotype . / . concode_field_sep String sampleName concode_elem_sep boolean isPhased concode_elem_sep int initialAttributeMapSize concode_elem_sep List<Allele> DIPLOID_NO_CALL concode_elem_sep int[] AD concode_elem_sep Map<String,Object> NO_ATTRIBUTES concode_elem_sep List<Allele> alleles concode_elem_sep Map<String,Object> extendedAttributes concode_elem_sep String filters concode_elem_sep int DP concode_elem_sep int GQ concode_elem_sep int[] PL concode_elem_sep List<Allele> HAPLOID_NO_CALL concode_field_sep GenotypeBuilder AD concode_elem_sep GenotypeBuilder noAttributes concode_elem_sep GenotypeBuilder GQ concode_elem_sep GenotypeBuilder filters concode_elem_sep GenotypeBuilder filters concode_elem_sep GenotypeBuilder DP concode_elem_sep GenotypeBuilder unfiltered concode_elem_sep GenotypeBuilder noPL concode_elem_sep GenotypeBuilder phased concode_elem_sep GenotypeBuilder filter concode_elem_sep GenotypeBuilder noAD concode_elem_sep GenotypeBuilder maxAttributes concode_elem_sep GenotypeBuilder name concode_elem_sep GenotypeBuilder noGQ concode_elem_sep Genotype create concode_elem_sep Genotype create concode_elem_sep Genotype create concode_elem_sep void reset concode_elem_sep GenotypeBuilder attributes concode_elem_sep GenotypeBuilder copy concode_elem_sep GenotypeBuilder attribute concode_elem_sep GenotypeBuilder PL concode_elem_sep GenotypeBuilder PL concode_elem_sep Genotype make concode_elem_sep GenotypeBuilder log10PError concode_elem_sep GenotypeBuilder noDP concode_elem_sep GenotypeBuilder alleles