String function ( ) { int loc0 = matrixFileName . lastIndexOf ( "srini_string" ) ; if ( loc0 > - 1 ) return matrixFileName . substring ( loc0 + 1 ) ; return matrixFileName ; }
get the current scoring matrix name concode_field_sep int LOCATION_JAR_ARCHIVE concode_elem_sep int idimension concode_elem_sep String matrixFilesLocation concode_elem_sep int locationType concode_elem_sep String matrixFileName concode_elem_sep String DEFAULT_MATRIX concode_elem_sep Hashtable residueMatrixPosition concode_elem_sep int LOCATION_DATA_DIR concode_elem_sep int matrix[][] concode_elem_sep int jdimension concode_elem_sep int i concode_elem_sep int k concode_elem_sep Object[] keys concode_elem_sep String matrixString concode_field_sep int[][] matrixReadString concode_elem_sep String getMatrixTable concode_elem_sep int getMatrixIndex concode_elem_sep int getJDimension concode_elem_sep String getKeyNamesString concode_elem_sep int[][] matrixRead concode_elem_sep void changeMatrix concode_elem_sep Object[] getKeys concode_elem_sep void matrixLineParse concode_elem_sep int[][] getMatrix concode_elem_sep Hashtable getResidueMatrixPosition concode_elem_sep String readFileAsString concode_elem_sep RE getRegularExpression concode_elem_sep void matrixLineCount concode_elem_sep int getIDimension concode_elem_sep Object[] getKeyNames