Covariate function ( final String arg0 ) { return allCovariates . stream ( ) . filter ( cov -> cov . parseNameForReport ( ) . equals ( arg0 ) ) . findFirst ( ) . orElse ( null ) ; }
retrieves a covariate by the parsed name covariate #parsenameforreport or nullif no covariate with that name exists in the list . concode_field_sep QualityScoreCovariate qualityScoreCovariate concode_elem_sep ReadGroupCovariate readGroupCovariate concode_elem_sep Map<Class<? extends Covariate>,Integer> indexByClass concode_elem_sep List<Covariate> additionalCovariates concode_elem_sep long serialVersionUID concode_elem_sep List<Covariate> allCovariates concode_field_sep List<String> getStandardCovariateClassNames concode_elem_sep Iterator<Covariate> iterator concode_elem_sep void recordAllValuesInStorage concode_elem_sep int size concode_elem_sep QualityScoreCovariate getQualityScoreCovariate concode_elem_sep ReadGroupCovariate getReadGroupCovariate concode_elem_sep Covariate get concode_elem_sep int indexByClass concode_elem_sep int numberOfSpecialCovariates concode_elem_sep Iterable<Covariate> getAdditionalCovariates concode_elem_sep String covariateNames