Atom function ( Atom [ ] arg0 , int arg1 , int arg2 ) { Atom loc0 = new AtomImpl ( ) ; if ( arg1 + arg2 > arg0 . length ) { System . err . println ( "srini_string" + arg1 + "srini_string" + arg2 + "srini_string" + arg0 . length ) ; return loc0 ; } Atom [ ] loc1 = getFragmentNoClone ( arg0 , arg1 , arg2 ) ; return Calc . getCentroid ( loc1 ) ; }
get the centroid for the set of atoms starting fromposition pos , length fragmentlenght concode_field_sep PlaceHolder placeHolder concode_field_sep Matrix getDistanceMatrix concode_elem_sep double rms_dk_diag concode_elem_sep Atom[] getFragmentFromIdxList concode_elem_sep double[] getDiagonalAtK concode_elem_sep Atom[] getFragment concode_elem_sep Atom[] getFragmentNoClone