def _get_column(in_file, out_file, column, data=None):
    """Subset one column from a file
    """
    with file_transaction(data, out_file) as tx_out_file:
        with open(in_file) as in_handle:
            with open(tx_out_file, 'w') as out_handle:
                for line in in_handle:
                    cols = line.strip().split("\t")
                    if line.find("eff_count") > 0:
                        continue
                    number = cols[column]
                    if column == 7:
                        number = int(round(float(number), 0))
                    out_handle.write("%s\t%s\n" % (cols[1], number))
    return out_file
Subset one column from a file