def summary(args):
    """
    %prog summary coordsfile

    provide summary on id% and cov%, for both query and reference
    """
    from jcvi.formats.blast import AlignStats

    p = OptionParser(summary.__doc__)
    p.add_option("-s", dest="single", default=False, action="store_true",
            help="provide stats per reference seq")

    opts, args = p.parse_args(args)

    if len(args) != 1:
        sys.exit(p.print_help())

    coordsfile, = args
    alignstats = get_stats(coordsfile)
    alignstats.print_stats()
%prog summary coordsfile

    provide summary on id% and cov%, for both query and reference