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trajectory. This PDF can be used for inspecting individual trajectories. Note
that plotting all trajectories can be time-consuming, especially for raw
trajectories. If the appropriate x and y arguments are
inserted, this function can also be used for plotting velocity and
acceleration profiles."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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    <h1>Create PDF with separate plots per trajectory.</h1>
    <small class="dont-index">Source: <a href="https://github.com/pascalkieslich/mousetrap/blob/HEAD/R/visualize.R" class="external-link"><code>R/visualize.R</code></a></small>
    <div class="hidden name"><code>mt_plot_per_trajectory.Rd</code></div>
    </div>

    <div class="ref-description">
    <p><code>mt_plot_per_trajectory</code> creates a PDF file with separate plots per
trajectory. This PDF can be used for inspecting individual trajectories. Note
that plotting all trajectories can be time-consuming, especially for raw
trajectories. If the appropriate <code>x</code> and <code>y</code> arguments are
inserted, this function can also be used for plotting velocity and
acceleration profiles.</p>
    </div>

    <div id="ref-usage">
    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">mt_plot_per_trajectory</span><span class="op">(</span></span>
<span>  <span class="va">file</span>,</span>
<span>  <span class="va">data</span>,</span>
<span>  use <span class="op">=</span> <span class="st">"trajectories"</span>,</span>
<span>  x <span class="op">=</span> <span class="st">"xpos"</span>,</span>
<span>  y <span class="op">=</span> <span class="st">"ypos"</span>,</span>
<span>  xlim <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span>  ylim <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span>  axes_exact <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span>  points <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span>  rect <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span>  color <span class="op">=</span> <span class="st">"black"</span>,</span>
<span>  fill <span class="op">=</span> <span class="cn">NA</span>,</span>
<span>  verbose <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span>  <span class="va">...</span></span>
<span><span class="op">)</span></span></code></pre></div>
    </div>

    <div id="arguments">
    <h2>Arguments</h2>
    <dl><dt>file</dt>
<dd><p>a character string specifying the name of the PDF file. Passed on
to <a href="https://rdrr.io/r/grDevices/pdf.html" class="external-link">pdf</a>.</p></dd>


<dt>data</dt>
<dd><p>a mousetrap data object created using one of the mt_import
functions (see <a href="mt_example.html">mt_example</a> for details). Alternatively, a trajectory
array can be provided directly (in this case <code>use</code> will be ignored).</p></dd>


<dt>use</dt>
<dd><p>a character string specifying which trajectories should be
plotted. The corresponding trajectories are selected from data using
<code>data[[use]]</code>. Usually, this value corresponds to either
"trajectories", "tn_trajectories" or "av_trajectories", depending on
whether the raw, time-normalized or averaged trajectories should be
plotted.</p></dd>


<dt>x</dt>
<dd><p>a character string specifying which dimension in the trajectory
array should be displayed on the x-axis (defaults to xpos).</p></dd>


<dt>y</dt>
<dd><p>a character string specifying which dimension in the trajectory
array should be displayed on the y-axis (defaults to ypos).</p></dd>


<dt>xlim</dt>
<dd><p>optional argument specifying the limits for the x axis (passed on
to <a href="https://ggplot2.tidyverse.org/reference/coord_cartesian.html" class="external-link">coord_cartesian</a>). If not specified (the default),
sensible axis limits will be computed.</p></dd>


<dt>ylim</dt>
<dd><p>optional argument specifying the limits for the y axis (passed on
to <a href="https://ggplot2.tidyverse.org/reference/coord_cartesian.html" class="external-link">coord_cartesian</a>). If not specified (the default),
sensible axis limits will be computed.</p></dd>


<dt>axes_exact</dt>
<dd><p>logical. If <code>TRUE</code>, axes will be set without offset
exactly at the limits of the x and y axes (which can be specified using
<code>xlim</code> and <code>ylim</code>]).</p></dd>


<dt>points</dt>
<dd><p>logical. If <code>TRUE</code>, points will be added to the plot using
<a href="https://ggplot2.tidyverse.org/reference/geom_point.html" class="external-link">geom_point</a>.</p></dd>


<dt>rect</dt>
<dd><p>optional argument passed on to <a href="mt_plot_add_rect.html">mt_plot_add_rect</a>. If
specified, rectangles (usually representing the response buttons) will be
plotted for each trajectory plot.</p></dd>


<dt>color</dt>
<dd><p>optional argument passed on to <a href="mt_plot_add_rect.html">mt_plot_add_rect</a>. Only
relevant if <code>rect</code> is specified.</p></dd>


<dt>fill</dt>
<dd><p>optional argument passed on to <a href="mt_plot_add_rect.html">mt_plot_add_rect</a>. Only
relevant if <code>rect</code> is specified.</p></dd>


<dt>verbose</dt>
<dd><p>logical indicating whether function should report its
progress.</p></dd>


<dt>...</dt>
<dd><p>additional arguments passed on to <a href="https://rdrr.io/r/grDevices/pdf.html" class="external-link">pdf</a>.</p></dd>

</dl></div>
    <div id="details">
    <h2>Details</h2>
    <p><code>mt_plot_per_trajectory</code> creates a PDF using <a href="https://rdrr.io/r/grDevices/pdf.html" class="external-link">pdf</a>.
Next, it plots all trajectories individually using <a href="mt_plot.html">mt_plot</a>. Every plot
is labeled using the <a href="https://rdrr.io/r/base/colnames.html" class="external-link">rownames</a> of the trajectories.</p>
    </div>
    <div id="see-also">
    <h2>See also</h2>
    <div class="dont-index"><p><a href="mt_plot.html">mt_plot</a> for plotting trajectory data.</p></div>
    </div>
    <div id="author">
    <h2>Author</h2>
    <p>Pascal J. Kieslich</p>
<p>Felix Henninger</p>
    </div>

    <div id="ref-examples">
    <h2>Examples</h2>
    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span></span></span>
<span class="r-in"><span><span class="fu">mt_plot_per_trajectory</span><span class="op">(</span><span class="va">mt_example</span>,</span></span>
<span class="r-in"><span>  file<span class="op">=</span><span class="st">"trajectories.pdf"</span>,</span></span>
<span class="r-in"><span>  use<span class="op">=</span><span class="st">"trajectories"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">}</span></span></span>
<span class="r-in"><span></span></span>
</code></pre></div>
    </div>
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