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description: Attribute Standardizer Output Schema in alignment with BEDBASE schema |
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properties: |
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sample_name: |
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type: string |
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description: "Name of the sample" |
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genome: |
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type: string |
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description: "Type of Genome Assemblies (eg. GRCh38)" |
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species_name: |
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type: string |
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description: "Name of species. e.g. Homo sapiens.", alias="organism" |
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species_id: |
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type: string |
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description: "Species identifier, resolvable by identifiers.org (eg. taxonomy:9606)" |
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genotype: |
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type: string |
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description: "Genotype of the sample" |
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phenotype: |
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type: string |
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description: "Phenotype of the sample" |
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cell_type: |
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type: string |
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description: "Cell type, population of cells that can be grown indefinitely in the lab, used for research, drug testing, and studying biological processes" |
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cell_line: |
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type: string |
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description: "A cultured, immortalized cell population derived from a single cell type, used for experimental research or therapeutic purposes." |
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tissue: |
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type: string |
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description: "Tissue type" |
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library_source: |
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type: string |
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description: "Library source (e.g. genomic, transcriptomic)" |
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assay: |
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type: string |
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description: "Experimental protocol (e.g. ChIP-seq)", alias="exp_protocol" |
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antibody: |
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type: string |
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description: "Antibody used in the assay" |
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target: |
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type: string |
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description: "Target of the assay (e.g. H3K4me3)" |
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treatment: |
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type: string |
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description: "Treatment of the sample (e.g. drug treatment)" |
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required: |
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- None |
