Update README.md

README.md

@@ -103,4 +103,24 @@ ATGGCTTTATGGATGCGTCTGCTGCCGCTGCTGGCGCTGCTGGCGCTGTGGGGCCCGGACCCGGCGGCGGCGTTTGTGAA
   https://pypi.org/project/CodonTransformer/
 
 - **Paper** <br>
-  https://www.biorxiv.org/content/10.1101/2024.09.13.612903
+  - **Paper** <br>
+  https://www.nature.com/articles/s41467-025-58588-7
+
+
+## Citation
+```
+@article{Fallahpour_Gureghian_Filion_Lindner_Pandi_2025,
+  title={CodonTransformer: a multispecies codon optimizer using context-aware neural networks},
+  volume={16},
+  ISSN={2041-1723},
+  url={https://www.nature.com/articles/s41467-025-58588-7},
+  DOI={10.1038/s41467-025-58588-7},
+  number={1},
+  journal={Nature Communications},
+  author={Fallahpour, Adibvafa and Gureghian, Vincent and Filion, Guillaume J. and Lindner, Ariel B. and Pandi, Amir},
+  year={2025},
+  month=apr,
+  pages={3205},
+  language={en}
+}
+```