# segmentation-model-v3.1.3_spines

### Performance Metrics

| Class    |   Precision |   Precision_std |   Recall |   Recall_std |   Mean_IoU |   Mean_IoU_std |
|:---------|------------:|----------------:|---------:|-------------:|-----------:|---------------:|
| Junction |       58.4  |           24.4  |    41.46 |        26.47 |       0.32 |           0.19 |
| process  |       89.12 |            6.08 |    90.48 |         3.94 |       0.59 |           0.08 |
| soma     |       86.59 |           30.33 |    75.56 |        32.97 |       0.83 |           0.23 |
| spine    |       33.09 |           13.83 |    33.55 |        13.35 |       0.25 |           0.17 |


### Performance Metrics

| Bio object                          |               gt |               pr | pr/gt   |
|:------------------------------------|-----------------:|-----------------:|:--------|
| Total_area_of_neuronal_process_um^2 |      1.03571e+06 |      1.45283e+06 | 140.27% |
| Total_Length_of_neuronal_process_um |  81753.7         |  80158.1         | 98.05%  |
| Total_Area_of_soma_um^2             | 170835           | 139919           | 81.90%  |
| Number_of_soma_count                |     50           |     34           | 68.00%  |
| junctions_count                     |    521           |    280           | 53.74%  |
| Number_of_spine_count               |    783           |    399           | 50.96%  |
| Total_area_of_spine_um^2            |  41147           |  16813           | 40.86%  |


### Plots

![boxplot_soma.png](./plots/boxplot_soma.png)
![boxplot_spine.png](./plots/boxplot_spine.png)
![boxplot_Junction.png](./plots/boxplot_Junction.png)
![boxplot_process.png](./plots/boxplot_process.png)