Initial upload of files

README.md

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+# segmentation-model-v3.1.3_junctions
+
+### Performance Metrics
+
+| Class    |   Precision |   Precision_std |   Recall |   Recall_std |   Mean_IoU |   Mean_IoU_std |
+|:---------|------------:|----------------:|---------:|-------------:|-----------:|---------------:|
+| Junction |       58.06 |           22.42 |    63.56 |        22.77 |       0.39 |           0.08 |
+| process  |       89.43 |            6.1  |    89.82 |         3.66 |       0.58 |           0.08 |
+| soma     |       86.59 |           30.33 |    75.56 |        32.97 |       0.83 |           0.23 |
+| spine    |       35.83 |           15.01 |    29.07 |        11.24 |       0.38 |           0.06 |
+
+
+### Performance Metrics
+
+| Bio object                          |               gt |               pr | pr/gt   |
+|:------------------------------------|-----------------:|-----------------:|:--------|
+| Total_area_of_neuronal_process_um^2 |      1.03571e+06 |      1.41578e+06 | 136.70% |
+| junctions_count                     |    521           |    580           | 111.32% |
+| Total_Length_of_neuronal_process_um |  81753.7         |  81021.4         | 99.10%  |
+| Total_Area_of_soma_um^2             | 170835           | 140050           | 81.98%  |
+| Number_of_soma_count                |     50           |     34           | 68.00%  |
+| Number_of_spine_count               |    783           |    347           | 44.32%  |
+| Total_area_of_spine_um^2            |  41147           |  14780           | 35.92%  |
+
+
+### Plots
+
+![boxplot_soma.png](./plots/boxplot_soma.png)
+![boxplot_spine.png](./plots/boxplot_spine.png)
+![boxplot_Junction.png](./plots/boxplot_Junction.png)
+![boxplot_process.png](./plots/boxplot_process.png)

bio_objects_summary.csv

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+Bio object,gt,pr,pr/gt
+Total_area_of_neuronal_process_um^2,1035710.00,1415776.00,136.70%
+junctions_count,521.00,580.00,111.32%
+Total_Length_of_neuronal_process_um,81753.71,81021.40,99.10%
+Total_Area_of_soma_um^2,170835.00,140050.00,81.98%
+Number_of_soma_count,50.00,34.00,68.00%
+Number_of_spine_count,783.00,347.00,44.32%
+Total_area_of_spine_um^2,41147.00,14780.00,35.92%

class_metrics_raw.csv

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class_metrics_summary.csv

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+Class,Precision,Precision_std,Recall,Recall_std,Mean_IoU,Mean_IoU_std
+Junction,58.06,22.42,63.56,22.77,0.39,0.08
+process,89.43,6.1,89.82,3.66,0.58,0.08
+soma,86.59,30.33,75.56,32.97,0.83,0.23
+spine,35.83,15.01,29.07,11.24,0.38,0.06

gt_bio_objects.csv

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pr_bio_objects.csv

@@ -0,0 +1,31 @@
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