Upload folder using huggingface_hub
Browse files- README.md +206 -0
- adapter_config.json +48 -0
- adapter_model.safetensors +3 -0
- special_tokens_map.json +10 -0
- tokenizer.json +192 -0
- tokenizer_config.json +65 -0
- training_args.bin +3 -0
README.md
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---
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base_model: Synthyra/ESMplusplus_small
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library_name: peft
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tags:
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- base_model:adapter:Synthyra/ESMplusplus_small
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- lora
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- transformers
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---
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# Model Card for Model ID
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<!-- Provide a quick summary of what the model is/does. -->
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## Model Details
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### Model Description
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<!-- Provide a longer summary of what this model is. -->
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- **Developed by:** [More Information Needed]
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- **Funded by [optional]:** [More Information Needed]
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- **Shared by [optional]:** [More Information Needed]
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- **Model type:** [More Information Needed]
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- **Language(s) (NLP):** [More Information Needed]
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- **License:** [More Information Needed]
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- **Finetuned from model [optional]:** [More Information Needed]
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### Model Sources [optional]
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<!-- Provide the basic links for the model. -->
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- **Repository:** [More Information Needed]
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- **Paper [optional]:** [More Information Needed]
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- **Demo [optional]:** [More Information Needed]
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## Uses
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<!-- Address questions around how the model is intended to be used, including the foreseeable users of the model and those affected by the model. -->
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### Direct Use
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<!-- This section is for the model use without fine-tuning or plugging into a larger ecosystem/app. -->
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[More Information Needed]
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### Downstream Use [optional]
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<!-- This section is for the model use when fine-tuned for a task, or when plugged into a larger ecosystem/app -->
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[More Information Needed]
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### Out-of-Scope Use
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<!-- This section addresses misuse, malicious use, and uses that the model will not work well for. -->
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[More Information Needed]
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## Bias, Risks, and Limitations
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<!-- This section is meant to convey both technical and sociotechnical limitations. -->
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[More Information Needed]
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### Recommendations
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<!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
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Users (both direct and downstream) should be made aware of the risks, biases and limitations of the model. More information needed for further recommendations.
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## How to Get Started with the Model
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Use the code below to get started with the model.
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[More Information Needed]
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## Training Details
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### Training Data
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<!-- This should link to a Dataset Card, perhaps with a short stub of information on what the training data is all about as well as documentation related to data pre-processing or additional filtering. -->
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[More Information Needed]
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### Training Procedure
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<!-- This relates heavily to the Technical Specifications. Content here should link to that section when it is relevant to the training procedure. -->
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#### Preprocessing [optional]
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[More Information Needed]
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#### Training Hyperparameters
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- **Training regime:** [More Information Needed] <!--fp32, fp16 mixed precision, bf16 mixed precision, bf16 non-mixed precision, fp16 non-mixed precision, fp8 mixed precision -->
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#### Speeds, Sizes, Times [optional]
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<!-- This section provides information about throughput, start/end time, checkpoint size if relevant, etc. -->
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[More Information Needed]
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## Evaluation
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<!-- This section describes the evaluation protocols and provides the results. -->
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### Testing Data, Factors & Metrics
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#### Testing Data
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<!-- This should link to a Dataset Card if possible. -->
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[More Information Needed]
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#### Factors
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<!-- These are the things the evaluation is disaggregating by, e.g., subpopulations or domains. -->
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[More Information Needed]
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#### Metrics
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<!-- These are the evaluation metrics being used, ideally with a description of why. -->
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[More Information Needed]
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### Results
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[More Information Needed]
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#### Summary
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## Model Examination [optional]
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<!-- Relevant interpretability work for the model goes here -->
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[More Information Needed]
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## Environmental Impact
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<!-- Total emissions (in grams of CO2eq) and additional considerations, such as electricity usage, go here. Edit the suggested text below accordingly -->
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Carbon emissions can be estimated using the [Machine Learning Impact calculator](https://mlco2.github.io/impact#compute) presented in [Lacoste et al. (2019)](https://arxiv.org/abs/1910.09700).
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- **Hardware Type:** [More Information Needed]
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- **Hours used:** [More Information Needed]
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- **Cloud Provider:** [More Information Needed]
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- **Compute Region:** [More Information Needed]
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- **Carbon Emitted:** [More Information Needed]
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## Technical Specifications [optional]
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### Model Architecture and Objective
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[More Information Needed]
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### Compute Infrastructure
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[More Information Needed]
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#### Hardware
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[More Information Needed]
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#### Software
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[More Information Needed]
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## Citation [optional]
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<!-- If there is a paper or blog post introducing the model, the APA and Bibtex information for that should go in this section. -->
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**BibTeX:**
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[More Information Needed]
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**APA:**
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[More Information Needed]
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## Glossary [optional]
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<!-- If relevant, include terms and calculations in this section that can help readers understand the model or model card. -->
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[More Information Needed]
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## More Information [optional]
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[More Information Needed]
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## Model Card Authors [optional]
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[More Information Needed]
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## Model Card Contact
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[More Information Needed]
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### Framework versions
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- PEFT 0.17.0
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adapter_config.json
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{
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"alpha_pattern": {},
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"auto_mapping": {
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"base_model_class": "ESMplusplusForTokenClassification",
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"parent_library": "transformers_modules.Synthyra.ESMplusplus_small.1e40c1b8ef46c33f93a9b817eb0bd81279ab4088.modeling_esm_plusplus"
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},
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"base_model_name_or_path": "Synthyra/ESMplusplus_small",
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"bias": "none",
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"corda_config": null,
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"eva_config": null,
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"exclude_modules": null,
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"fan_in_fan_out": false,
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"inference_mode": true,
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"init_lora_weights": true,
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"layer_replication": null,
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"layers_pattern": null,
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"layers_to_transform": null,
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"loftq_config": {},
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"lora_alpha": 16,
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"lora_bias": false,
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"lora_dropout": 0.01,
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"megatron_config": null,
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"megatron_core": "megatron.core",
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"modules_to_save": [
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"classifier.0",
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"classifier.2",
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"classifier.3"
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],
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"peft_type": "LORA",
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"qalora_group_size": 16,
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"r": 8,
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"rank_pattern": {},
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"revision": null,
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"target_modules": [
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"key",
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"layernorm_qkv.1",
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"value",
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"dense",
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"query",
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"out_proj"
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],
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"target_parameters": null,
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"task_type": null,
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"trainable_token_indices": null,
|
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"use_dora": false,
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"use_qalora": false,
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"use_rslora": false
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}
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adapter_model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:6d38650bb7b767c8381493af21c3d327abbf6aed1f37523e30e4cbad9f4b46bf
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size 20369392
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special_tokens_map.json
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{
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"additional_special_tokens": [
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"|"
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],
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"cls_token": "<cls>",
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"eos_token": "<eos>",
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"mask_token": "<mask>",
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"pad_token": "<pad>",
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"unk_token": "<unk>"
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}
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tokenizer.json
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{
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"version": "1.0",
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"truncation": null,
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"padding": {
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"strategy": "BatchLongest",
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"direction": "Right",
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"pad_to_multiple_of": null,
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"pad_id": 1,
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"pad_type_id": 0,
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"pad_token": "<pad>"
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},
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"added_tokens": [
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{
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"id": 0,
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"content": "<cls>",
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"single_word": false,
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"lstrip": false,
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"rstrip": false,
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"normalized": false,
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"special": true
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},
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{
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"id": 1,
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"content": "<pad>",
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"single_word": false,
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"lstrip": false,
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"rstrip": false,
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"normalized": false,
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"special": true
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30 |
+
},
|
31 |
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{
|
32 |
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|
33 |
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|
34 |
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|
35 |
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|
36 |
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|
37 |
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|
38 |
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|
39 |
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|
40 |
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{
|
41 |
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|
42 |
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|
43 |
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|
44 |
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|
45 |
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|
46 |
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|
47 |
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|
48 |
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|
49 |
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{
|
50 |
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|
51 |
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|
52 |
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|
53 |
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|
54 |
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|
55 |
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|
56 |
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|
57 |
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},
|
58 |
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{
|
59 |
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|
60 |
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|
61 |
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|
62 |
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|
63 |
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"rstrip": false,
|
64 |
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|
65 |
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|
66 |
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}
|
67 |
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],
|
68 |
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|
69 |
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|
70 |
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"post_processor": {
|
71 |
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|
72 |
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"single": [
|
73 |
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{
|
74 |
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|
75 |
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|
76 |
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|
77 |
+
}
|
78 |
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},
|
79 |
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{
|
80 |
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|
81 |
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|
82 |
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|
83 |
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|
84 |
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|
85 |
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{
|
86 |
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|
87 |
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|
88 |
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|
89 |
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|
90 |
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|
91 |
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|
92 |
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|
93 |
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{
|
94 |
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|
95 |
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|
96 |
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|
97 |
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}
|
98 |
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},
|
99 |
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{
|
100 |
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|
101 |
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|
102 |
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|
103 |
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}
|
104 |
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},
|
105 |
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{
|
106 |
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"SpecialToken": {
|
107 |
+
"id": "<eos>",
|
108 |
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"type_id": 0
|
109 |
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}
|
110 |
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|
111 |
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{
|
112 |
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|
113 |
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|
114 |
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|
115 |
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|
116 |
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|
117 |
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{
|
118 |
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|
119 |
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|
120 |
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"type_id": 1
|
121 |
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}
|
122 |
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}
|
123 |
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],
|
124 |
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|
125 |
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|
126 |
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|
127 |
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|
128 |
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0
|
129 |
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],
|
130 |
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|
131 |
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"<cls>"
|
132 |
+
]
|
133 |
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},
|
134 |
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"<eos>": {
|
135 |
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"id": "<eos>",
|
136 |
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"ids": [
|
137 |
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2
|
138 |
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],
|
139 |
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"tokens": [
|
140 |
+
"<eos>"
|
141 |
+
]
|
142 |
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}
|
143 |
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|
144 |
+
},
|
145 |
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|
146 |
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"model": {
|
147 |
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|
148 |
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|
149 |
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|
150 |
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|
151 |
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|
152 |
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|
153 |
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|
154 |
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|
155 |
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|
156 |
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"<cls>": 0,
|
157 |
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"<pad>": 1,
|
158 |
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|
159 |
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|
160 |
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|
161 |
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|
162 |
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|
163 |
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"V": 7,
|
164 |
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|
165 |
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"E": 9,
|
166 |
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"R": 10,
|
167 |
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"T": 11,
|
168 |
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"I": 12,
|
169 |
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"D": 13,
|
170 |
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"P": 14,
|
171 |
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"K": 15,
|
172 |
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"Q": 16,
|
173 |
+
"N": 17,
|
174 |
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"F": 18,
|
175 |
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"Y": 19,
|
176 |
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"M": 20,
|
177 |
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"H": 21,
|
178 |
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"W": 22,
|
179 |
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"C": 23,
|
180 |
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"X": 24,
|
181 |
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"B": 25,
|
182 |
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"U": 26,
|
183 |
+
"Z": 27,
|
184 |
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"O": 28,
|
185 |
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".": 29,
|
186 |
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"-": 30,
|
187 |
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"|": 31,
|
188 |
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"<mask>": 32
|
189 |
+
},
|
190 |
+
"merges": []
|
191 |
+
}
|
192 |
+
}
|
tokenizer_config.json
ADDED
@@ -0,0 +1,65 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"added_tokens_decoder": {
|
3 |
+
"0": {
|
4 |
+
"content": "<cls>",
|
5 |
+
"lstrip": false,
|
6 |
+
"normalized": false,
|
7 |
+
"rstrip": false,
|
8 |
+
"single_word": false,
|
9 |
+
"special": true
|
10 |
+
},
|
11 |
+
"1": {
|
12 |
+
"content": "<pad>",
|
13 |
+
"lstrip": false,
|
14 |
+
"normalized": false,
|
15 |
+
"rstrip": false,
|
16 |
+
"single_word": false,
|
17 |
+
"special": true
|
18 |
+
},
|
19 |
+
"2": {
|
20 |
+
"content": "<eos>",
|
21 |
+
"lstrip": false,
|
22 |
+
"normalized": false,
|
23 |
+
"rstrip": false,
|
24 |
+
"single_word": false,
|
25 |
+
"special": true
|
26 |
+
},
|
27 |
+
"3": {
|
28 |
+
"content": "<unk>",
|
29 |
+
"lstrip": false,
|
30 |
+
"normalized": false,
|
31 |
+
"rstrip": false,
|
32 |
+
"single_word": false,
|
33 |
+
"special": true
|
34 |
+
},
|
35 |
+
"31": {
|
36 |
+
"content": "|",
|
37 |
+
"lstrip": false,
|
38 |
+
"normalized": false,
|
39 |
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"rstrip": false,
|
40 |
+
"single_word": false,
|
41 |
+
"special": true
|
42 |
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},
|
43 |
+
"32": {
|
44 |
+
"content": "<mask>",
|
45 |
+
"lstrip": false,
|
46 |
+
"normalized": false,
|
47 |
+
"rstrip": false,
|
48 |
+
"single_word": false,
|
49 |
+
"special": true
|
50 |
+
}
|
51 |
+
},
|
52 |
+
"additional_special_tokens": [
|
53 |
+
"|"
|
54 |
+
],
|
55 |
+
"bos_token": "<cls>",
|
56 |
+
"clean_up_tokenization_spaces": false,
|
57 |
+
"cls_token": "<cls>",
|
58 |
+
"eos_token": "<eos>",
|
59 |
+
"extra_special_tokens": {},
|
60 |
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"mask_token": "<mask>",
|
61 |
+
"model_max_length": 1000000000000000019884624838656,
|
62 |
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"pad_token": "<pad>",
|
63 |
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"tokenizer_class": "EsmSequenceTokenizer",
|
64 |
+
"unk_token": "<unk>"
|
65 |
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}
|
training_args.bin
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:71511bd6bada64dd41976e173d363227797ac245f820df1df40fa24665159c3d
|
3 |
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size 5713
|