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from io import BytesIO |
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import os |
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import pathlib |
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import tarfile |
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import zipfile |
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import numpy as np |
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import pytest |
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from pandas.compat.pyarrow import pa_version_under17p0 |
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from pandas import ( |
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DataFrame, |
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Index, |
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date_range, |
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read_csv, |
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read_excel, |
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read_json, |
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read_parquet, |
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) |
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import pandas._testing as tm |
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from pandas.util import _test_decorators as td |
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pytestmark = pytest.mark.filterwarnings( |
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"ignore:Passing a BlockManager to DataFrame:DeprecationWarning" |
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) |
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@pytest.fixture |
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def gcs_buffer(): |
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"""Emulate GCS using a binary buffer.""" |
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pytest.importorskip("gcsfs") |
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fsspec = pytest.importorskip("fsspec") |
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gcs_buffer = BytesIO() |
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gcs_buffer.close = lambda: True |
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class MockGCSFileSystem(fsspec.AbstractFileSystem): |
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@staticmethod |
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def open(*args, **kwargs): |
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gcs_buffer.seek(0) |
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return gcs_buffer |
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def ls(self, path, **kwargs): |
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return [{"name": path, "type": "file"}] |
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fsspec.register_implementation("gs", MockGCSFileSystem, clobber=True) |
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return gcs_buffer |
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@pytest.mark.single_cpu |
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@pytest.mark.parametrize("format", ["csv", "json", "parquet", "excel", "markdown"]) |
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def test_to_read_gcs(gcs_buffer, format, monkeypatch, capsys, request): |
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""" |
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Test that many to/read functions support GCS. |
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GH 33987 |
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""" |
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df1 = DataFrame( |
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{ |
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"int": [1, 3], |
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"float": [2.0, np.nan], |
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"str": ["t", "s"], |
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"dt": date_range("2018-06-18", periods=2), |
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} |
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) |
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path = f"gs://test/test.{format}" |
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if format == "csv": |
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df1.to_csv(path, index=True) |
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df2 = read_csv(path, parse_dates=["dt"], index_col=0) |
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elif format == "excel": |
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path = "gs://test/test.xlsx" |
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df1.to_excel(path) |
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df2 = read_excel(path, parse_dates=["dt"], index_col=0) |
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elif format == "json": |
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df1.to_json(path) |
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df2 = read_json(path, convert_dates=["dt"]) |
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elif format == "parquet": |
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pytest.importorskip("pyarrow") |
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pa_fs = pytest.importorskip("pyarrow.fs") |
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class MockFileSystem(pa_fs.FileSystem): |
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@staticmethod |
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def from_uri(path): |
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print("Using pyarrow filesystem") |
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to_local = pathlib.Path(path.replace("gs://", "")).absolute().as_uri() |
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return pa_fs.LocalFileSystem(to_local) |
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request.applymarker( |
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pytest.mark.xfail( |
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not pa_version_under17p0, |
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raises=TypeError, |
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reason="pyarrow 17 broke the mocked filesystem", |
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) |
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) |
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with monkeypatch.context() as m: |
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m.setattr(pa_fs, "FileSystem", MockFileSystem) |
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df1.to_parquet(path) |
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df2 = read_parquet(path) |
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captured = capsys.readouterr() |
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assert captured.out == "Using pyarrow filesystem\nUsing pyarrow filesystem\n" |
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elif format == "markdown": |
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pytest.importorskip("tabulate") |
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df1.to_markdown(path) |
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df2 = df1 |
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tm.assert_frame_equal(df1, df2) |
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def assert_equal_zip_safe(result: bytes, expected: bytes, compression: str): |
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""" |
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For zip compression, only compare the CRC-32 checksum of the file contents |
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to avoid checking the time-dependent last-modified timestamp which |
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in some CI builds is off-by-one |
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See https://en.wikipedia.org/wiki/ZIP_(file_format)#File_headers |
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""" |
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if compression == "zip": |
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with zipfile.ZipFile(BytesIO(result)) as exp, zipfile.ZipFile( |
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BytesIO(expected) |
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) as res: |
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for res_info, exp_info in zip(res.infolist(), exp.infolist()): |
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assert res_info.CRC == exp_info.CRC |
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elif compression == "tar": |
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with tarfile.open(fileobj=BytesIO(result)) as tar_exp, tarfile.open( |
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fileobj=BytesIO(expected) |
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) as tar_res: |
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for tar_res_info, tar_exp_info in zip( |
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tar_res.getmembers(), tar_exp.getmembers() |
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): |
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actual_file = tar_res.extractfile(tar_res_info) |
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expected_file = tar_exp.extractfile(tar_exp_info) |
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assert (actual_file is None) == (expected_file is None) |
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if actual_file is not None and expected_file is not None: |
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assert actual_file.read() == expected_file.read() |
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else: |
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assert result == expected |
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@pytest.mark.parametrize("encoding", ["utf-8", "cp1251"]) |
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def test_to_csv_compression_encoding_gcs( |
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gcs_buffer, compression_only, encoding, compression_to_extension |
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): |
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""" |
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Compression and encoding should with GCS. |
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GH 35677 (to_csv, compression), GH 26124 (to_csv, encoding), and |
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GH 32392 (read_csv, encoding) |
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""" |
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df = DataFrame( |
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1.1 * np.arange(120).reshape((30, 4)), |
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columns=Index(list("ABCD"), dtype=object), |
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index=Index([f"i-{i}" for i in range(30)], dtype=object), |
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) |
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compression = {"method": compression_only} |
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if compression_only == "gzip": |
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compression["mtime"] = 1 |
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buffer = BytesIO() |
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df.to_csv(buffer, compression=compression, encoding=encoding, mode="wb") |
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path_gcs = "gs://test/test.csv" |
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df.to_csv(path_gcs, compression=compression, encoding=encoding) |
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res = gcs_buffer.getvalue() |
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expected = buffer.getvalue() |
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assert_equal_zip_safe(res, expected, compression_only) |
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read_df = read_csv( |
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path_gcs, index_col=0, compression=compression_only, encoding=encoding |
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) |
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tm.assert_frame_equal(df, read_df) |
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file_ext = compression_to_extension[compression_only] |
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compression["method"] = "infer" |
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path_gcs += f".{file_ext}" |
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df.to_csv(path_gcs, compression=compression, encoding=encoding) |
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res = gcs_buffer.getvalue() |
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expected = buffer.getvalue() |
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assert_equal_zip_safe(res, expected, compression_only) |
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read_df = read_csv(path_gcs, index_col=0, compression="infer", encoding=encoding) |
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tm.assert_frame_equal(df, read_df) |
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def test_to_parquet_gcs_new_file(monkeypatch, tmpdir): |
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"""Regression test for writing to a not-yet-existent GCS Parquet file.""" |
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pytest.importorskip("fastparquet") |
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pytest.importorskip("gcsfs") |
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from fsspec import AbstractFileSystem |
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df1 = DataFrame( |
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{ |
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"int": [1, 3], |
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"float": [2.0, np.nan], |
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"str": ["t", "s"], |
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"dt": date_range("2018-06-18", periods=2), |
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} |
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) |
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class MockGCSFileSystem(AbstractFileSystem): |
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def open(self, path, mode="r", *args): |
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if "w" not in mode: |
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raise FileNotFoundError |
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return open(os.path.join(tmpdir, "test.parquet"), mode, encoding="utf-8") |
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monkeypatch.setattr("gcsfs.GCSFileSystem", MockGCSFileSystem) |
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df1.to_parquet( |
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"gs://test/test.csv", index=True, engine="fastparquet", compression=None |
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) |
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@td.skip_if_installed("gcsfs") |
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def test_gcs_not_present_exception(): |
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with tm.external_error_raised(ImportError): |
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read_csv("gs://test/test.csv") |
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