File size: 23,808 Bytes

7885a28

# copied from numpydoc/docscrape.py, commit 97a6026508e0dd5382865672e9563a72cc113bd2
"""Extract reference documentation from the NumPy source tree."""

import copy
import inspect
import pydoc
import re
import sys
import textwrap
from collections import namedtuple
from collections.abc import Callable, Mapping
from functools import cached_property
from warnings import warn


def strip_blank_lines(l):
    "Remove leading and trailing blank lines from a list of lines"
    while l and not l[0].strip():
        del l[0]
    while l and not l[-1].strip():
        del l[-1]
    return l


class Reader:
    """A line-based string reader."""

    def __init__(self, data):
        """
        Parameters
        ----------
        data : str
           String with lines separated by '\\n'.

        """
        if isinstance(data, list):
            self._str = data
        else:
            self._str = data.split("\n")  # store string as list of lines

        self.reset()

    def __getitem__(self, n):
        return self._str[n]

    def reset(self):
        self._l = 0  # current line nr

    def read(self):
        if not self.eof():
            out = self[self._l]
            self._l += 1
            return out
        else:
            return ""

    def seek_next_non_empty_line(self):
        for l in self[self._l :]:
            if l.strip():
                break
            else:
                self._l += 1

    def eof(self):
        return self._l >= len(self._str)

    def read_to_condition(self, condition_func):
        start = self._l
        for line in self[start:]:
            if condition_func(line):
                return self[start : self._l]
            self._l += 1
            if self.eof():
                return self[start : self._l + 1]
        return []

    def read_to_next_empty_line(self):
        self.seek_next_non_empty_line()

        def is_empty(line):
            return not line.strip()

        return self.read_to_condition(is_empty)

    def read_to_next_unindented_line(self):
        def is_unindented(line):
            return line.strip() and (len(line.lstrip()) == len(line))

        return self.read_to_condition(is_unindented)

    def peek(self, n=0):
        if self._l + n < len(self._str):
            return self[self._l + n]
        else:
            return ""

    def is_empty(self):
        return not "".join(self._str).strip()


class ParseError(Exception):
    def __str__(self):
        message = self.args[0]
        if hasattr(self, "docstring"):
            message = f"{message} in {self.docstring!r}"
        return message


Parameter = namedtuple("Parameter", ["name", "type", "desc"])


class NumpyDocString(Mapping):
    """Parses a numpydoc string to an abstract representation

    Instances define a mapping from section title to structured data.

    """

    sections = {
        "Signature": "",
        "Summary": [""],
        "Extended Summary": [],
        "Parameters": [],
        "Attributes": [],
        "Methods": [],
        "Returns": [],
        "Yields": [],
        "Receives": [],
        "Other Parameters": [],
        "Raises": [],
        "Warns": [],
        "Warnings": [],
        "See Also": [],
        "Notes": [],
        "References": "",
        "Examples": "",
        "index": {},
    }

    def __init__(self, docstring, config=None):
        orig_docstring = docstring
        docstring = textwrap.dedent(docstring).split("\n")

        self._doc = Reader(docstring)
        self._parsed_data = copy.deepcopy(self.sections)

        try:
            self._parse()
        except ParseError as e:
            e.docstring = orig_docstring
            raise

    def __getitem__(self, key):
        return self._parsed_data[key]

    def __setitem__(self, key, val):
        if key not in self._parsed_data:
            self._error_location(f"Unknown section {key}", error=False)
        else:
            self._parsed_data[key] = val

    def __iter__(self):
        return iter(self._parsed_data)

    def __len__(self):
        return len(self._parsed_data)

    def _is_at_section(self):
        self._doc.seek_next_non_empty_line()

        if self._doc.eof():
            return False

        l1 = self._doc.peek().strip()  # e.g. Parameters

        if l1.startswith(".. index::"):
            return True

        l2 = self._doc.peek(1).strip()  # ---------- or ==========
        if len(l2) >= 3 and (set(l2) in ({"-"}, {"="})) and len(l2) != len(l1):
            snip = "\n".join(self._doc._str[:2]) + "..."
            self._error_location(
                f"potentially wrong underline length... \n{l1} \n{l2} in \n{snip}",
                error=False,
            )
        return l2.startswith("-" * len(l1)) or l2.startswith("=" * len(l1))

    def _strip(self, doc):
        i = 0
        j = 0
        for i, line in enumerate(doc):
            if line.strip():
                break

        for j, line in enumerate(doc[::-1]):
            if line.strip():
                break

        return doc[i : len(doc) - j]

    def _read_to_next_section(self):
        section = self._doc.read_to_next_empty_line()

        while not self._is_at_section() and not self._doc.eof():
            if not self._doc.peek(-1).strip():  # previous line was empty
                section += [""]

            section += self._doc.read_to_next_empty_line()

        return section

    def _read_sections(self):
        while not self._doc.eof():
            data = self._read_to_next_section()
            name = data[0].strip()

            if name.startswith(".."):  # index section
                yield name, data[1:]
            elif len(data) < 2:
                yield StopIteration
            else:
                yield name, self._strip(data[2:])

    def _parse_param_list(self, content, single_element_is_type=False):
        content = dedent_lines(content)
        r = Reader(content)
        params = []
        while not r.eof():
            header = r.read().strip()
            if " : " in header:
                arg_name, arg_type = header.split(" : ", maxsplit=1)
            else:
                # NOTE: param line with single element should never have a
                # a " :" before the description line, so this should probably
                # warn.
                if header.endswith(" :"):
                    header = header[:-2]
                if single_element_is_type:
                    arg_name, arg_type = "", header
                else:
                    arg_name, arg_type = header, ""

            desc = r.read_to_next_unindented_line()
            desc = dedent_lines(desc)
            desc = strip_blank_lines(desc)

            params.append(Parameter(arg_name, arg_type, desc))

        return params

    # See also supports the following formats.
    #
    # <FUNCNAME>
    # <FUNCNAME> SPACE* COLON SPACE+ <DESC> SPACE*
    # <FUNCNAME> ( COMMA SPACE+ <FUNCNAME>)+ (COMMA | PERIOD)? SPACE*
    # <FUNCNAME> ( COMMA SPACE+ <FUNCNAME>)* SPACE* COLON SPACE+ <DESC> SPACE*

    # <FUNCNAME> is one of
    #   <PLAIN_FUNCNAME>
    #   COLON <ROLE> COLON BACKTICK <PLAIN_FUNCNAME> BACKTICK
    # where
    #   <PLAIN_FUNCNAME> is a legal function name, and
    #   <ROLE> is any nonempty sequence of word characters.
    # Examples: func_f1  :meth:`func_h1` :obj:`~baz.obj_r` :class:`class_j`
    # <DESC> is a string describing the function.

    _role = r":(?P<role>(py:)?\w+):"
    _funcbacktick = r"`(?P<name>(?:~\w+\.)?[a-zA-Z0-9_\.-]+)`"
    _funcplain = r"(?P<name2>[a-zA-Z0-9_\.-]+)"
    _funcname = r"(" + _role + _funcbacktick + r"|" + _funcplain + r")"
    _funcnamenext = _funcname.replace("role", "rolenext")
    _funcnamenext = _funcnamenext.replace("name", "namenext")
    _description = r"(?P<description>\s*:(\s+(?P<desc>\S+.*))?)?\s*$"
    _func_rgx = re.compile(r"^\s*" + _funcname + r"\s*")
    _line_rgx = re.compile(
        r"^\s*"
        + r"(?P<allfuncs>"
        + _funcname  # group for all function names
        + r"(?P<morefuncs>([,]\s+"
        + _funcnamenext
        + r")*)"
        + r")"
        + r"(?P<trailing>[,\.])?"  # end of "allfuncs"
        + _description  # Some function lists have a trailing comma (or period)  '\s*'
    )

    # Empty <DESC> elements are replaced with '..'
    empty_description = ".."

    def _parse_see_also(self, content):
        """
        func_name : Descriptive text
            continued text
        another_func_name : Descriptive text
        func_name1, func_name2, :meth:`func_name`, func_name3

        """

        content = dedent_lines(content)

        items = []

        def parse_item_name(text):
            """Match ':role:`name`' or 'name'."""
            m = self._func_rgx.match(text)
            if not m:
                self._error_location(f"Error parsing See Also entry {line!r}")
            role = m.group("role")
            name = m.group("name") if role else m.group("name2")
            return name, role, m.end()

        rest = []
        for line in content:
            if not line.strip():
                continue

            line_match = self._line_rgx.match(line)
            description = None
            if line_match:
                description = line_match.group("desc")
                if line_match.group("trailing") and description:
                    self._error_location(
                        "Unexpected comma or period after function list at index %d of "
                        'line "%s"' % (line_match.end("trailing"), line),
                        error=False,
                    )
            if not description and line.startswith(" "):
                rest.append(line.strip())
            elif line_match:
                funcs = []
                text = line_match.group("allfuncs")
                while True:
                    if not text.strip():
                        break
                    name, role, match_end = parse_item_name(text)
                    funcs.append((name, role))
                    text = text[match_end:].strip()
                    if text and text[0] == ",":
                        text = text[1:].strip()
                rest = list(filter(None, [description]))
                items.append((funcs, rest))
            else:
                self._error_location(f"Error parsing See Also entry {line!r}")
        return items

    def _parse_index(self, section, content):
        """
        .. index:: default
           :refguide: something, else, and more

        """

        def strip_each_in(lst):
            return [s.strip() for s in lst]

        out = {}
        section = section.split("::")
        if len(section) > 1:
            out["default"] = strip_each_in(section[1].split(","))[0]
        for line in content:
            line = line.split(":")
            if len(line) > 2:
                out[line[1]] = strip_each_in(line[2].split(","))
        return out

    def _parse_summary(self):
        """Grab signature (if given) and summary"""
        if self._is_at_section():
            return

        # If several signatures present, take the last one
        while True:
            summary = self._doc.read_to_next_empty_line()
            summary_str = " ".join([s.strip() for s in summary]).strip()
            compiled = re.compile(r"^([\w., ]+=)?\s*[\w\.]+\(.*\)$")
            if compiled.match(summary_str):
                self["Signature"] = summary_str
                if not self._is_at_section():
                    continue
            break

        if summary is not None:
            self["Summary"] = summary

        if not self._is_at_section():
            self["Extended Summary"] = self._read_to_next_section()

    def _parse(self):
        self._doc.reset()
        self._parse_summary()

        sections = list(self._read_sections())
        section_names = {section for section, content in sections}

        has_yields = "Yields" in section_names
        # We could do more tests, but we are not. Arbitrarily.
        if not has_yields and "Receives" in section_names:
            msg = "Docstring contains a Receives section but not Yields."
            raise ValueError(msg)

        for section, content in sections:
            if not section.startswith(".."):
                section = (s.capitalize() for s in section.split(" "))
                section = " ".join(section)
                if self.get(section):
                    self._error_location(
                        "The section %s appears twice in  %s"
                        % (section, "\n".join(self._doc._str))
                    )

            if section in ("Parameters", "Other Parameters", "Attributes", "Methods"):
                self[section] = self._parse_param_list(content)
            elif section in ("Returns", "Yields", "Raises", "Warns", "Receives"):
                self[section] = self._parse_param_list(
                    content, single_element_is_type=True
                )
            elif section.startswith(".. index::"):
                self["index"] = self._parse_index(section, content)
            elif section == "See Also":
                self["See Also"] = self._parse_see_also(content)
            else:
                self[section] = content

    @property
    def _obj(self):
        if hasattr(self, "_cls"):
            return self._cls
        elif hasattr(self, "_f"):
            return self._f
        return None

    def _error_location(self, msg, error=True):
        if self._obj is not None:
            # we know where the docs came from:
            try:
                filename = inspect.getsourcefile(self._obj)
            except TypeError:
                filename = None
            # Make UserWarning more descriptive via object introspection.
            # Skip if introspection fails
            name = getattr(self._obj, "__name__", None)
            if name is None:
                name = getattr(getattr(self._obj, "__class__", None), "__name__", None)
            if name is not None:
                msg += f" in the docstring of {name}"
            msg += f" in {filename}." if filename else ""
        if error:
            raise ValueError(msg)
        else:
            warn(msg, stacklevel=3)

    # string conversion routines

    def _str_header(self, name, symbol="-"):
        return [name, len(name) * symbol]

    def _str_indent(self, doc, indent=4):
        return [" " * indent + line for line in doc]

    def _str_signature(self):
        if self["Signature"]:
            return [self["Signature"].replace("*", r"\*")] + [""]
        return [""]

    def _str_summary(self):
        if self["Summary"]:
            return self["Summary"] + [""]
        return []

    def _str_extended_summary(self):
        if self["Extended Summary"]:
            return self["Extended Summary"] + [""]
        return []

    def _str_param_list(self, name):
        out = []
        if self[name]:
            out += self._str_header(name)
            for param in self[name]:
                parts = []
                if param.name:
                    parts.append(param.name)
                if param.type:
                    parts.append(param.type)
                out += [" : ".join(parts)]
                if param.desc and "".join(param.desc).strip():
                    out += self._str_indent(param.desc)
            out += [""]
        return out

    def _str_section(self, name):
        out = []
        if self[name]:
            out += self._str_header(name)
            out += self[name]
            out += [""]
        return out

    def _str_see_also(self, func_role):
        if not self["See Also"]:
            return []
        out = []
        out += self._str_header("See Also")
        out += [""]
        last_had_desc = True
        for funcs, desc in self["See Also"]:
            assert isinstance(funcs, list)
            links = []
            for func, role in funcs:
                if role:
                    link = f":{role}:`{func}`"
                elif func_role:
                    link = f":{func_role}:`{func}`"
                else:
                    link = f"`{func}`_"
                links.append(link)
            link = ", ".join(links)
            out += [link]
            if desc:
                out += self._str_indent([" ".join(desc)])
                last_had_desc = True
            else:
                last_had_desc = False
                out += self._str_indent([self.empty_description])

        if last_had_desc:
            out += [""]
        out += [""]
        return out

    def _str_index(self):
        idx = self["index"]
        out = []
        output_index = False
        default_index = idx.get("default", "")
        if default_index:
            output_index = True
        out += [f".. index:: {default_index}"]
        for section, references in idx.items():
            if section == "default":
                continue
            output_index = True
            out += [f"   :{section}: {', '.join(references)}"]
        if output_index:
            return out
        return ""

    def __str__(self, func_role=""):
        out = []
        out += self._str_signature()
        out += self._str_summary()
        out += self._str_extended_summary()
        out += self._str_param_list("Parameters")
        for param_list in ("Attributes", "Methods"):
            out += self._str_param_list(param_list)
        for param_list in (
            "Returns",
            "Yields",
            "Receives",
            "Other Parameters",
            "Raises",
            "Warns",
        ):
            out += self._str_param_list(param_list)
        out += self._str_section("Warnings")
        out += self._str_see_also(func_role)
        for s in ("Notes", "References", "Examples"):
            out += self._str_section(s)
        out += self._str_index()
        return "\n".join(out)


def dedent_lines(lines):
    """Deindent a list of lines maximally"""
    return textwrap.dedent("\n".join(lines)).split("\n")


class FunctionDoc(NumpyDocString):
    def __init__(self, func, role="func", doc=None, config=None):
        self._f = func
        self._role = role  # e.g. "func" or "meth"

        if doc is None:
            if func is None:
                raise ValueError("No function or docstring given")
            doc = inspect.getdoc(func) or ""
        if config is None:
            config = {}
        NumpyDocString.__init__(self, doc, config)

    def get_func(self):
        func_name = getattr(self._f, "__name__", self.__class__.__name__)
        if inspect.isclass(self._f):
            func = getattr(self._f, "__call__", self._f.__init__)
        else:
            func = self._f
        return func, func_name

    def __str__(self):
        out = ""

        func, func_name = self.get_func()

        roles = {"func": "function", "meth": "method"}

        if self._role:
            if self._role not in roles:
                print(f"Warning: invalid role {self._role}")
            out += f".. {roles.get(self._role, '')}:: {func_name}\n    \n\n"

        out += super().__str__(func_role=self._role)
        return out


class ObjDoc(NumpyDocString):
    def __init__(self, obj, doc=None, config=None):
        self._f = obj
        if config is None:
            config = {}
        NumpyDocString.__init__(self, doc, config=config)


class ClassDoc(NumpyDocString):
    extra_public_methods = ["__call__"]

    def __init__(self, cls, doc=None, modulename="", func_doc=FunctionDoc, config=None):
        if not inspect.isclass(cls) and cls is not None:
            raise ValueError(f"Expected a class or None, but got {cls!r}")
        self._cls = cls

        if "sphinx" in sys.modules:
            from sphinx.ext.autodoc import ALL
        else:
            ALL = object()

        if config is None:
            config = {}
        self.show_inherited_members = config.get("show_inherited_class_members", True)

        if modulename and not modulename.endswith("."):
            modulename += "."
        self._mod = modulename

        if doc is None:
            if cls is None:
                raise ValueError("No class or documentation string given")
            doc = pydoc.getdoc(cls)

        NumpyDocString.__init__(self, doc)

        _members = config.get("members", [])
        if _members is ALL:
            _members = None
        _exclude = config.get("exclude-members", [])

        if config.get("show_class_members", True) and _exclude is not ALL:

            def splitlines_x(s):
                if not s:
                    return []
                else:
                    return s.splitlines()

            for field, items in [
                ("Methods", self.methods),
                ("Attributes", self.properties),
            ]:
                if not self[field]:
                    doc_list = []
                    for name in sorted(items):
                        if name in _exclude or (_members and name not in _members):
                            continue
                        try:
                            doc_item = pydoc.getdoc(getattr(self._cls, name))
                            doc_list.append(Parameter(name, "", splitlines_x(doc_item)))
                        except AttributeError:
                            pass  # method doesn't exist
                    self[field] = doc_list

    @property
    def methods(self):
        if self._cls is None:
            return []
        return [
            name
            for name, func in inspect.getmembers(self._cls)
            if (
                (not name.startswith("_") or name in self.extra_public_methods)
                and isinstance(func, Callable)
                and self._is_show_member(name)
            )
        ]

    @property
    def properties(self):
        if self._cls is None:
            return []
        return [
            name
            for name, func in inspect.getmembers(self._cls)
            if (
                not name.startswith("_")
                and not self._should_skip_member(name, self._cls)
                and (
                    func is None
                    or isinstance(func, (property, cached_property))
                    or inspect.isdatadescriptor(func)
                )
                and self._is_show_member(name)
            )
        ]

    @staticmethod
    def _should_skip_member(name, klass):
        return (
            # Namedtuples should skip everything in their ._fields as the
            # docstrings for each of the members is: "Alias for field number X"
            issubclass(klass, tuple)
            and hasattr(klass, "_asdict")
            and hasattr(klass, "_fields")
            and name in klass._fields
        )

    def _is_show_member(self, name):
        return (
            # show all class members
            self.show_inherited_members
            # or class member is not inherited
            or name in self._cls.__dict__
        )


def get_doc_object(
    obj,
    what=None,
    doc=None,
    config=None,
    class_doc=ClassDoc,
    func_doc=FunctionDoc,
    obj_doc=ObjDoc,
):
    if what is None:
        if inspect.isclass(obj):
            what = "class"
        elif inspect.ismodule(obj):
            what = "module"
        elif isinstance(obj, Callable):
            what = "function"
        else:
            what = "object"
    if config is None:
        config = {}

    if what == "class":
        return class_doc(obj, func_doc=func_doc, doc=doc, config=config)
    elif what in ("function", "method"):
        return func_doc(obj, doc=doc, config=config)
    else:
        if doc is None:
            doc = pydoc.getdoc(obj)
        return obj_doc(obj, doc, config=config)