Update README.md
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README.md
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@@ -43,14 +43,32 @@ config = model.config
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max_length = config.max_position_embeddings
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# Define input sequences.
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# The input sequence length should be a
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sequences = [
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"ATGAGGTGGCAAGAAATGGGCTAC",
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"GAATTCCATGAGGCTATAGAATAATCTAAGAGAAAT"
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]
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# Process the sequences
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sequences = [tokenizer.bos_token + sequence for sequence in
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# Tokenize the sequences
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tokenizer.padding_side = "left"
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max_length = config.max_position_embeddings
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# Define input sequences.
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sequences = [
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"ATGAGGTGGCAAGAAATGGGCTAC",
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"GAATTCCATGAGGCTATAGAATAATCTAAGAGAAAT"
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]
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def left_padding(sequence, padding_char='A', multiple=6):
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remainder = len(sequence) % multiple
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if remainder != 0:
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padding_length = multiple - remainder
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return padding_char * padding_length + sequence
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return sequence
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def left_truncation(sequence, multiple=6):
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remainder = len(sequence) % multiple
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if remainder != 0:
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return sequence[remainder:]
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return sequence
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# Apply left_padding to all sequences
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# padded_sequences = [left_padding(seq) for seq in sequences]
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# Apply left_truncation to all sequences
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truncated_sequences = [left_truncation(seq) for seq in sequences]
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# Process the sequences
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sequences = [tokenizer.bos_token + sequence for sequence in truncated_sequences]
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# Tokenize the sequences
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tokenizer.padding_side = "left"
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