Delete model_info.json
Browse files- model_info.json +0 -169
model_info.json
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{
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"metric_params": {
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"quality_metric_params": {
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"metric_names": [
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"amplitude_cutoff",
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"amplitude_cv",
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"amplitude_median",
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"d_prime",
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"drift",
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"firing_range",
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"firing_rate",
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"isi_violation",
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"isolation_distance",
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"l_ratio",
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"nearest_neighbor",
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"num_spikes",
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"presence_ratio",
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"rp_violation",
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"sd_ratio",
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"silhouette",
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"sliding_rp_violation",
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"snr",
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"synchrony"
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],
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"peak_sign": null,
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"seed": null,
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"qm_params": {
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"presence_ratio": {
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"bin_duration_s": 60,
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"mean_fr_ratio_thresh": 0.0
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},
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"snr": {
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"peak_sign": "neg",
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"peak_mode": "extremum"
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},
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"isi_violation": {
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"isi_threshold_ms": 1.5,
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"min_isi_ms": 0
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},
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"rp_violation": {
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"refractory_period_ms": 1.0,
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"censored_period_ms": 0.0
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},
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"sliding_rp_violation": {
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"min_spikes": 0,
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"bin_size_ms": 0.25,
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"window_size_s": 1,
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"exclude_ref_period_below_ms": 0.5,
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"max_ref_period_ms": 10,
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"contamination_values": null
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},
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"synchrony": {
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"synchrony_sizes": [
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2,
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4,
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8
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]
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},
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"firing_range": {
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"bin_size_s": 5,
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"percentiles": [
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5,
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95
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]
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},
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"amplitude_cv": {
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"average_num_spikes_per_bin": 50,
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"percentiles": [
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5,
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95
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],
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"min_num_bins": 10,
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"amplitude_extension": "spike_amplitudes"
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},
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"amplitude_cutoff": {
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"peak_sign": "neg",
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"num_histogram_bins": 100,
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"histogram_smoothing_value": 3,
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"amplitudes_bins_min_ratio": 5
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},
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"amplitude_median": {
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"peak_sign": "neg"
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},
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"drift": {
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"interval_s": 60,
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"min_spikes_per_interval": 100,
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"direction": "y",
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"min_num_bins": 2
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},
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"nearest_neighbor": {
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"max_spikes": 10000,
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"n_neighbors": 5
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},
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"nn_isolation": {
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"max_spikes": 10000,
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"min_spikes": 10,
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"min_fr": 0.0,
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"n_neighbors": 4,
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"n_components": 10,
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"radius_um": 100,
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"peak_sign": "neg"
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},
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"nn_noise_overlap": {
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"max_spikes": 10000,
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"min_spikes": 10,
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"min_fr": 0.0,
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"n_neighbors": 4,
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"n_components": 10,
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"radius_um": 100,
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"peak_sign": "neg"
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},
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"silhouette": {
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"method": [
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"simplified"
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]
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}
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},
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"skip_pc_metrics": false
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},
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"template_metric_params": {
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"metric_names": [
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"half_width",
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"num_negative_peaks",
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"num_positive_peaks",
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"peak_to_valley",
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"peak_trough_ratio",
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"recovery_slope",
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"repolarization_slope"
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],
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"sparsity": null,
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"peak_sign": "neg",
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"upsampling_factor": 10,
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"metrics_kwargs": {
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"recovery_window_ms": 0.7,
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"peak_relative_threshold": 0.2,
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"peak_width_ms": 0.1,
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"depth_direction": "y",
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"min_channels_for_velocity": 5,
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"min_r2_velocity": 0.5,
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"exp_peak_function": "ptp",
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"min_r2_exp_decay": 0.5,
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"spread_threshold": 0.2,
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"spread_smooth_um": 20,
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"column_range": null
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}
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}
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},
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"requirements": {
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"spikeinterface": "0.100.1",
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"scikit-learn": "1.3.2"
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},
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"label_conversion": {
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"0": "neuron",
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"1": "noise"
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},
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"additional_required_files": {
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"filename": "cascaded_classifier.py"
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},
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"untrusted_types_imports": {
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"untrusted_types": [
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"numpy.dtype",
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"sklearn.metrics._classification.balanced_accuracy_score",
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"sklearn.metrics._scorer._PredictScorer",
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"sklearn.model_selection._search_successive_halving.HalvingGridSearchCV",
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"sklearn.model_selection._split.StratifiedKFold",
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"__main__.CascadedClassifier"
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]
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}
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}
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